Literature DB >> 15835892

Different effects of 4-hydroxyproline and 4-fluoroproline on the stability of collagen triple helix.

Yoshinori Nishi1, Susumu Uchiyama, Masamitsu Doi, Yuji Nishiuchi, Takashi Nakazawa, Tadayasu Ohkubo, Yuji Kobayashi.   

Abstract

Differential scanning calorimetry (DSC) analyses of a series of collagen model peptides suggest that 4-hydroxyproline (Hyp) and 4-fluoroproline (fPro) have different effects on the stability of the collagen triple helices according to the sequence of amino acids and stereochemistry at the 4 positions of these imino acids. The thermodynamic parameters indicate that the enhanced stabilities are classified into two different types: the enthalpy term is primarily responsible for the enhanced stability of the triple helix of (Pro-Hyp(R)-Gly)(10), whereas the entropy term dominates the enhanced stability of (Pro-fPro(R)-Gly)(10). The difference between the molecular volumes observed in solution and intrinsic molecular volumes calculated from the crystal structure indicates the different hydration states of these peptides. (Pro-Hyp(R)-Gly)(10) is highly hydrated compared to (Pro-Pro-Gly)(10), which contributes to the larger enthalpy. In contrast, the volume of (Pro-fPro(R)-Gly)(10) shows a smaller degree of hydration than that of (Pro-Pro-Gly)(10). The entropic cost of forming the triple helix of the fPro-containing peptides is compensated by a decrease in an ordered structure of water molecules surrounding the peptide molecule, although the contribution of enthalpy originating from the hydration is reduced. These arguments about the different contribution of entropic and enthalpic terms were successfully applied to interpret the stability of the triple helix of (fPro(S)-Pro-Gly)(10) as well.

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Year:  2005        PMID: 15835892     DOI: 10.1021/bi047887m

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  22 in total

1.  Stabilization of the collagen triple helix by O-methylation of hydroxyproline residues.

Authors:  Frank W Kotch; Ilia A Guzei; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2008-02-14       Impact factor: 15.419

2.  Regulatory phosphorylation of poly-γ-glutamic acid with phosphate salts in the culture of Bacillus subtilis (natto).

Authors:  Osamu Kurita; Kaori Umetani; Yasushi Kokean; Hironori Maruyama; Toru Sago; Hiroyuki Iwamoto
Journal:  World J Microbiol Biotechnol       Date:  2018-04-06       Impact factor: 3.312

3.  Stereoelectronic and steric effects in side chains preorganize a protein main chain.

Authors:  Matthew D Shoulders; Kenneth A Satyshur; Katrina T Forest; Ronald T Raines
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-31       Impact factor: 11.205

4.  Thrombogenic collagen-mimetic peptides: Self-assembly of triple helix-based fibrils driven by hydrophobic interactions.

Authors:  Mabel A Cejas; William A Kinney; Cailin Chen; Jeremy G Vinter; Harold R Almond; Karin M Balss; Cynthia A Maryanoff; Ute Schmidt; Michael Breslav; Andrew Mahan; Eilyn Lacy; Bruce E Maryanoff
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-16       Impact factor: 11.205

5.  Role of hydration in collagen recognition by bacterial adhesins.

Authors:  Luigi Vitagliano; Rita Berisio; Alfonso De Simone
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

6.  The aberrance of the 4S diastereomer of 4-hydroxyproline.

Authors:  Matthew D Shoulders; Frank W Kotch; Amit Choudhary; Ilia A Guzei; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2010-08-11       Impact factor: 15.419

7.  4-Fluoroprolines: Conformational Analysis and Effects on the Stability and Folding of Peptides and Proteins.

Authors:  Robert W Newberry; Ronald T Raines
Journal:  Top Heterocycl Chem       Date:  2016-01-12

8.  Evolution of translation machinery in recoded bacteria enables multi-site incorporation of nonstandard amino acids.

Authors:  Miriam Amiram; Adrian D Haimovich; Chenguang Fan; Yane-Shih Wang; Hans-Rudolf Aerni; Ioanna Ntai; Daniel W Moonan; Natalie J Ma; Alexis J Rovner; Seok Hoon Hong; Neil L Kelleher; Andrew L Goodman; Michael C Jewett; Dieter Söll; Jesse Rinehart; Farren J Isaacs
Journal:  Nat Biotechnol       Date:  2015-11-16       Impact factor: 54.908

9.  Origin of the stability conferred upon collagen by fluorination.

Authors:  Matthew D Shoulders; Kimberli J Kamer; Ronald T Raines
Journal:  Bioorg Med Chem Lett       Date:  2009-04-21       Impact factor: 2.823

10.  Kinetics of a collagen-like polypeptide fragmentation after mid-IR free-electron laser ablation.

Authors:  Andrey Zavalin; David L Hachey; Munirathinam Sundaramoorthy; Surajit Banerjee; Steven Morgan; Leonard Feldman; Norman Tolk; David W Piston
Journal:  Biophys J       Date:  2008-04-25       Impact factor: 4.033

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