Literature DB >> 21539794

Role of hydration in collagen recognition by bacterial adhesins.

Luigi Vitagliano1, Rita Berisio, Alfonso De Simone.   

Abstract

Protein-protein recognition regulates the vast majority of physiological or pathological processes. We investigated the role of hydration in collagen recognition by bacterial adhesin CNA by means of first principle molecular-dynamics samplings. Our characterization of the hydration properties of the isolated partners highlights dewetting-prone areas on the surface of CNA that closely match the key regions involved in hydrophobic intermolecular interactions upon complex formation, suggesting that the hydration state of the ligand-free CNA predisposes the protein to the collagen recognition. Moreover, hydration maps of the CNA-collagen complex reveal the presence of a number of structured water molecules that mediate intermolecular interactions at the interface between the two proteins. These hydration sites feature long residence times, significant binding free energies, and a geometrical distribution that closely resembles the hydration pattern of the isolated collagen triple helix. These findings are striking evidence that CNA recognizes the collagen triple helix as a hydrated molecule. For this structural motif, the exposure of several unsatisfied backbone carbonyl groups results in a strong interplay with the solvent, which is shown to also play a role in collagen recognition.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21539794      PMCID: PMC3149249          DOI: 10.1016/j.bpj.2011.03.033

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  64 in total

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Authors:  Samir Kumar Pal; Jorge Peon; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

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Authors:  Rita Berisio; Luigi Vitagliano; Lelio Mazzarella; Adriana Zagari
Journal:  Protein Pept Lett       Date:  2002-04       Impact factor: 1.890

3.  Exploring the helix-coil transition via all-atom equilibrium ensemble simulations.

Authors:  Eric J Sorin; Vijay S Pande
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4.  Insight into the role of hydration on protein dynamics.

Authors:  Donald Hamelberg; Tongye Shen; J Andrew McCammon
Journal:  J Chem Phys       Date:  2006-09-07       Impact factor: 3.488

5.  Stabilizing isopeptide bonds revealed in gram-positive bacterial pilus structure.

Authors:  Hae Joo Kang; Fasséli Coulibaly; Fiona Clow; Thomas Proft; Edward N Baker
Journal:  Science       Date:  2007-12-07       Impact factor: 47.728

6.  Role of hydration in collagen triple helix stabilization.

Authors:  Alfonso De Simone; Luigi Vitagliano; Rita Berisio
Journal:  Biochem Biophys Res Commun       Date:  2008-05-15       Impact factor: 3.575

7.  The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition.

Authors:  F V Murphy; R M Sweet; M E Churchill
Journal:  EMBO J       Date:  1999-12-01       Impact factor: 11.598

8.  Conformation and dynamics of a rhodamine probe attached at two sites on a protein: implications for molecular structure determination in situ.

Authors:  Alfonso De Simone; John E T Corrie; Robert E Dale; Malcolm Irving; Franca Fraternali
Journal:  J Am Chem Soc       Date:  2008-12-17       Impact factor: 15.419

Review 9.  Collagen structure and stability.

Authors:  Matthew D Shoulders; Ronald T Raines
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

10.  Structural basis of sequence-specific collagen recognition by SPARC.

Authors:  Erhard Hohenester; Takako Sasaki; Camilla Giudici; Richard W Farndale; Hans Peter Bächinger
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-14       Impact factor: 11.205

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  7 in total

1.  The crystal structure of the streptococcal collagen-like protein 2 globular domain from invasive M3-type group A Streptococcus shows significant similarity to immunomodulatory HIV protein gp41.

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2.  Carbohydrate recognition by RpfB from Mycobacterium tuberculosis unveiled by crystallographic and molecular dynamics analyses.

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Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

Review 3.  A structural overview of mycobacterial adhesins: Key biomarkers for diagnostics and therapeutics.

Authors:  Flavia Squeglia; Alessia Ruggiero; Alfonso De Simone; Rita Berisio
Journal:  Protein Sci       Date:  2017-12-27       Impact factor: 6.725

4.  Dynamic Water-Mediated Hydrogen Bonding in a Collagen Model Peptide.

Authors:  Iwen Fu; David A Case; Jean Baum
Journal:  Biochemistry       Date:  2015-10-06       Impact factor: 3.162

5.  Application of sub-micrometer vibrations to mitigate bacterial adhesion.

Authors:  Will R Paces; Hal R Holmes; Eli Vlaisavljevich; Katherine L Snyder; Ee Lim Tan; Rupak M Rajachar; Keat Ghee Ong
Journal:  J Funct Biomater       Date:  2014-03-11

6.  Desolvation of the substrate-binding protein TauA dictates ligand specificity for the alkanesulfonate ABC importer TauABC.

Authors:  Feng Qu; Kamel ElOmari; Armin Wagner; Alfonso De Simone; Konstantinos Beis
Journal:  Biochem J       Date:  2019-12-12       Impact factor: 3.857

Review 7.  Polyproline and triple helix motifs in host-pathogen recognition.

Authors:  Rita Berisio; Luigi Vitagliano
Journal:  Curr Protein Pept Sci       Date:  2012-12       Impact factor: 3.272

  7 in total

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