Literature DB >> 15772749

A protein backbone psi and phi angle dependence of 2J(N(i),C alpha(i-1)): the new NMR experiment and quantum chemical calculations.

Wiktor Koźmiński1, Igor Zhukov, Magdalena Pecul, Joanna Sadlej.   

Abstract

A new pulse sequence exploiting double- and zero-quantum evolution of two-spin 15N-13C' coherence is proposed for the accurate measurements of 2J(N(i),C alpha(i-1)) coupling constants. Application of the new experiment is presented for 13C,15N-labeled ubiquitin sample. The density functional theory calculations of 2J(N(i),C alpha(i-1)) coupling constants have been performed to study their dependence on both psi(i - 1) and phi(i - 1) angle in model peptides, and the results exhibit a good correlation with experimental data.

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Year:  2005        PMID: 15772749     DOI: 10.1007/s10858-004-7563-7

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  20 in total

1.  Simultaneous measurement of protein one-bond and two-bond nitrogen-carbon coupling constants using an internally referenced quantitative J-correlated [(15)N,(1)H]-TROSY-HNC experiment.

Authors:  Hans L J Wienk; Mitcheell M Martínez; Gary N Yalloway; Jürgen M Schmidt; Carlos Pérez; Heinz Rüterjans; Frank Löhr
Journal:  J Biomol NMR       Date:  2003-02       Impact factor: 2.835

2.  Integration of spin-state-selective excitation into 2D NMR correlation experiments with the heteronuclear ZQ/2Q pi rotations for 1JXH- resolved E.COSY-type measurements of heteronuclear coupling constants in proteins.

Authors:  A Meissner; J O Duus; O W Sørensen
Journal:  J Biomol NMR       Date:  1997-07       Impact factor: 2.835

Review 3.  Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra.

Authors:  M Ottiger; F Delaglio; A Bax
Journal:  J Magn Reson       Date:  1998-04       Impact factor: 2.229

4.  High-resolution 3D HNCOCA experiment applied to a 28 kDa paramagnetic protein.

Authors:  B Brutscher; F Cordier; J P Simorre; M Caffrey; D Marion
Journal:  J Biomol NMR       Date:  1995-02       Impact factor: 2.835

5.  Calculations of one-, two- and three-bond nuclear spin-spin couplings in a model peptide and correlations with experimental data.

Authors:  A S Edison; J L Markley; F Weinhold
Journal:  J Biomol NMR       Date:  1994-07       Impact factor: 2.835

6.  Estimates of phi and psi torsion angles in proteins from one-, two- and three-bond nuclear spin-spin couplings: application to staphylococcal nuclease.

Authors:  A S Edison; F Weinhold; W M Westler; J L Markley
Journal:  J Biomol NMR       Date:  1994-07       Impact factor: 2.835

7.  Measurement of 15N-13C J couplings in staphylococcal nuclease.

Authors:  F Delaglio; D A Torchia; A Bax
Journal:  J Biomol NMR       Date:  1991-11       Impact factor: 2.835

8.  Protein Backbone 1H(N)-13Calpha and 15N-13Calpha residual dipolar and J couplings: new constraints for NMR structure determination.

Authors:  Keyang Ding; Angela M Gronenborn
Journal:  J Am Chem Soc       Date:  2004-05-26       Impact factor: 15.419

9.  Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution.

Authors:  J R Tolman; J M Flanagan; M A Kennedy; J H Prestegard
Journal:  Proc Natl Acad Sci U S A       Date:  1995-09-26       Impact factor: 11.205

10.  The set of triple-resonance sequences with a multiple quantum coherence evolution period.

Authors:  Wiktor Koźmiński; Igor Zhukov
Journal:  J Magn Reson       Date:  2004-12       Impact factor: 2.229

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  3 in total

1.  Conformational analysis of short polar side-chain amino-acids through umbrella sampling and DFT calculations.

Authors:  Javier Ramos; Victor L Cruz
Journal:  J Mol Model       Date:  2016-10-26       Impact factor: 1.810

2.  J-coupling constants for a trialanine peptide as a function of dihedral angles calculated by density functional theory over the full Ramachandran space.

Authors:  Pedro Salvador; I-Hsien Midas Tsai; J J Dannenberg
Journal:  Phys Chem Chem Phys       Date:  2011-09-06       Impact factor: 3.676

3.  Structure and dynamics of the first archaeal parvulin reveal a new functionally important loop in parvulin-type prolyl isomerases.

Authors:  Łukasz Jaremko; Mariusz Jaremko; Imadeldin Elfaki; Jonathan W Mueller; Andrzej Ejchart; Peter Bayer; Igor Zhukov
Journal:  J Biol Chem       Date:  2010-12-07       Impact factor: 5.157

  3 in total

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