Literature DB >> 12652122

Simultaneous measurement of protein one-bond and two-bond nitrogen-carbon coupling constants using an internally referenced quantitative J-correlated [(15)N,(1)H]-TROSY-HNC experiment.

Hans L J Wienk1, Mitcheell M Martínez, Gary N Yalloway, Jürgen M Schmidt, Carlos Pérez, Heinz Rüterjans, Frank Löhr.   

Abstract

A quantitative J-correlation pulse sequence is described that allows simultaneous determination of one-bond and two-bond nitrogen-carbon coupling constants for protonated or deuterated proteins. Coupling constants are calculated from volume ratios between cross peaks and reference axial peaks observed in a single 3D spectrum. Accurate backbone (1)J(NC'), (1)J(NCalpha), and (2)J(NCalpha) coupling constants are obtained for the two [(15)N;(13)C]-labeled, medium-sized proteins flavodoxin and xylanase and for the [(2)H;(15)N;(13)C]-labeled, large protein DFPase. A dependence of one-bond and two-bond J(NCalpha) values on protein backbone psi torsion angles is readily apparent, in agreement with previously found correlations. In addition, the experiment is performed on isotropic as well as aligned protein to measure associated (15)N-(13)C residual dipolar couplings.

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Year:  2003        PMID: 12652122     DOI: 10.1023/a:1022233103990

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  33 in total

1.  Simple multidimensional NMR experiments to obtain different types of one-bond dipolar couplings simultaneously.

Authors:  E de Alba; M Suzuki; N Tjandra
Journal:  J Biomol NMR       Date:  2001-01       Impact factor: 2.835

2.  Direct structure refinement of high molecular weight proteins against residual dipolar couplings and carbonyl chemical shift changes upon alignment: an application to maltose binding protein.

Authors:  W Y Choy; M Tollinger; G A Mueller; L E Kay
Journal:  J Biomol NMR       Date:  2001-09       Impact factor: 2.835

3.  Crystal structure of diisopropylfluorophosphatase from Loligo vulgaris.

Authors:  E I Scharff; J Koepke; G Fritzsch; C Lücke; H Rüterjans
Journal:  Structure       Date:  2001-06       Impact factor: 5.006

4.  Use of selective C alpha pulses for improvement of HN(CA)CO-D and HN(COCA)NH-D experiments.

Authors:  H Matsuo; E Kupce; H Li; G Wagner
Journal:  J Magn Reson B       Date:  1996-05

Review 5.  Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra.

Authors:  M Ottiger; F Delaglio; A Bax
Journal:  J Magn Reson       Date:  1998-04       Impact factor: 2.229

6.  Pulse schemes for the measurement of 3JC'C gamma and 3JNC gamma scalar couplings in 15N,13C uniformly labeled proteins.

Authors:  R Konrat; D R Muhandiram; N A Farrow; L E Kay
Journal:  J Biomol NMR       Date:  1997-06       Impact factor: 2.835

7.  Measurement of one-bond 15N-13C' dipolar couplings in medium sized proteins.

Authors:  J J Chou; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  2000-10       Impact factor: 2.835

8.  Short selective pulses for biochemical applications.

Authors:  E Kupce; J Boyd; I D Campbell
Journal:  J Magn Reson B       Date:  1995-03

9.  Single Transition-to-single Transition Polarization Transfer (ST2-PT) in [15N,1H]-TROSY.

Authors:  K V Pervushin; G Wider; K Wüthrich
Journal:  J Biomol NMR       Date:  1998-08       Impact factor: 2.835

10.  Measurement of 15N-13C J couplings in staphylococcal nuclease.

Authors:  F Delaglio; D A Torchia; A Bax
Journal:  J Biomol NMR       Date:  1991-11       Impact factor: 2.835

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  4 in total

1.  Improved accuracy in measuring one-bond and two-bond (15)N, (13)C (α) coupling constants in proteins by double-inphase/antiphase (DIPAP) spectroscopy.

Authors:  Frank Löhr; Sina Reckel; Susanne Stefer; Volker Dötsch; Jürgen M Schmidt
Journal:  J Biomol NMR       Date:  2011-06-07       Impact factor: 2.835

2.  A protein backbone psi and phi angle dependence of 2J(N(i),C alpha(i-1)): the new NMR experiment and quantum chemical calculations.

Authors:  Wiktor Koźmiński; Igor Zhukov; Magdalena Pecul; Joanna Sadlej
Journal:  J Biomol NMR       Date:  2005-02       Impact factor: 2.835

3.  A strategy to obtain backbone resonance assignments of deuterated proteins in the presence of incomplete amide 2H/1H back-exchange.

Authors:  Frank Löhr; Vicky Katsemi; Judith Hartleib; Ulrich Günther; Heinz Rüterjans
Journal:  J Biomol NMR       Date:  2003-04       Impact factor: 2.835

4.  Measurement of one and two bond N-C couplings in large proteins by TROSY-based J-modulation experiments.

Authors:  Yizhou Liu; James H Prestegard
Journal:  J Magn Reson       Date:  2009-06-17       Impact factor: 2.229

  4 in total

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