Literature DB >> 15149211

Protein Backbone 1H(N)-13Calpha and 15N-13Calpha residual dipolar and J couplings: new constraints for NMR structure determination.

Keyang Ding1, Angela M Gronenborn.   

Abstract

A simple, sensitivity-enhanced experiment was devised for accurate measurement of backbone 15N-13Calpha and 1HN-13Calpha couplings in proteins. The measured residual dipolar couplings 2DHCA, 1DNCA, 3DHCA, and 2DNCA for protein GB1 display very good agreement with the refined NMR structure (PDB code: 3GB1). A Karplus-type relationship between the one-bond 1JNCA couplings and the backbone dihedral psi angles holds, and on the basis of the two-bond 2JNCA couplings a secondary structure index can be established.

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Year:  2004        PMID: 15149211     DOI: 10.1021/ja049049l

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  18 in total

1.  A protein backbone psi and phi angle dependence of 2J(N(i),C alpha(i-1)): the new NMR experiment and quantum chemical calculations.

Authors:  Wiktor Koźmiński; Igor Zhukov; Magdalena Pecul; Joanna Sadlej
Journal:  J Biomol NMR       Date:  2005-02       Impact factor: 2.835

2.  A J-modulated protonless NMR experiment characterizes the conformational ensemble of the intrinsically disordered protein WIP.

Authors:  Eva Rozentur-Shkop; Gil Goobes; Jordan H Chill
Journal:  J Biomol NMR       Date:  2016-11-14       Impact factor: 2.835

3.  J-coupling constants for a trialanine peptide as a function of dihedral angles calculated by density functional theory over the full Ramachandran space.

Authors:  Pedro Salvador; I-Hsien Midas Tsai; J J Dannenberg
Journal:  Phys Chem Chem Phys       Date:  2011-09-06       Impact factor: 3.676

4.  A comparison of three DFT exchange-correlation functionals and two basis sets for the prediction of the conformation distribution of hydrated polyglycine.

Authors:  Ying Yuan; Feng Wang
Journal:  J Chem Phys       Date:  2021-09-07       Impact factor: 4.304

5.  ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB.

Authors:  James A Maier; Carmenza Martinez; Koushik Kasavajhala; Lauren Wickstrom; Kevin E Hauser; Carlos Simmerling
Journal:  J Chem Theory Comput       Date:  2015-07-23       Impact factor: 6.006

6.  MERA: a webserver for evaluating backbone torsion angle distributions in dynamic and disordered proteins from NMR data.

Authors:  Alexey B Mantsyzov; Yang Shen; Jung Ho Lee; Gerhard Hummer; Ad Bax
Journal:  J Biomol NMR       Date:  2015-07-29       Impact factor: 2.835

7.  Measurement of one and two bond N-C couplings in large proteins by TROSY-based J-modulation experiments.

Authors:  Yizhou Liu; James H Prestegard
Journal:  J Magn Reson       Date:  2009-06-17       Impact factor: 2.229

8.  A maximum entropy approach to the study of residue-specific backbone angle distributions in α-synuclein, an intrinsically disordered protein.

Authors:  Alexey B Mantsyzov; Alexander S Maltsev; Jinfa Ying; Yang Shen; Gerhard Hummer; Ad Bax
Journal:  Protein Sci       Date:  2014-07-22       Impact factor: 6.725

9.  Short peptides as predictors for the structure of polyarginine sequences in disordered proteins.

Authors:  Bridget Milorey; Reinhard Schweitzer-Stenner; Brian Andrews; Harald Schwalbe; Brigita Urbanc
Journal:  Biophys J       Date:  2021-01-14       Impact factor: 4.033

10.  Structure and dynamics of the first archaeal parvulin reveal a new functionally important loop in parvulin-type prolyl isomerases.

Authors:  Łukasz Jaremko; Mariusz Jaremko; Imadeldin Elfaki; Jonathan W Mueller; Andrzej Ejchart; Peter Bayer; Igor Zhukov
Journal:  J Biol Chem       Date:  2010-12-07       Impact factor: 5.157

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