Literature DB >> 15583125

Phi value versus psi analysis.

Alan R Fersht1.   

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Year:  2004        PMID: 15583125      PMCID: PMC536033          DOI: 10.1073/pnas.0407863101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


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  14 in total

Review 1.  Protein folding and unfolding at atomic resolution.

Authors:  Alan R Fersht; Valerie Daggett
Journal:  Cell       Date:  2002-02-22       Impact factor: 41.582

2.  Constructing, verifying, and dissecting the folding transition state of chymotrypsin inhibitor 2 with all-atom simulations.

Authors:  L Li; E I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-23       Impact factor: 11.205

Review 3.  Protein folding: bringing theory and experiment closer together.

Authors:  Michele Vendruscolo; Emanuele Paci
Journal:  Curr Opin Struct Biol       Date:  2003-02       Impact factor: 6.809

4.  Determination of a transition state at atomic resolution from protein engineering data.

Authors:  Emanuelel Paci; Michele Vendruscolo; Christopher M Dobson; Martin Karplus
Journal:  J Mol Biol       Date:  2002-11-15       Impact factor: 5.469

Review 5.  The present view of the mechanism of protein folding.

Authors:  Valerie Daggett; Alan Fersht
Journal:  Nat Rev Mol Cell Biol       Date:  2003-06       Impact factor: 94.444

6.  Calculation of mutational free energy changes in transition states for protein folding.

Authors:  Kresten Lindorff-Larsen; Emanuele Paci; Luis Serrano; Christopher M Dobson; Michele Vendruscolo
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

7.  Testing protein-folding simulations by experiment: B domain of protein A.

Authors:  Satoshi Sato; Tomasz L Religa; Valerie Daggett; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-06       Impact factor: 11.205

Review 8.  Theory of protein folding.

Authors:  José Nelson Onuchic; Peter G Wolynes
Journal:  Curr Opin Struct Biol       Date:  2004-02       Impact factor: 6.809

9.  Discerning the structure and energy of multiple transition states in protein folding using psi-analysis.

Authors:  Bryan A Krantz; Robin S Dothager; Tobin R Sosnick
Journal:  J Mol Biol       Date:  2004-03-19       Impact factor: 5.469

10.  Differences in the folding transition state of ubiquitin indicated by phi and psi analyses.

Authors:  Tobin R Sosnick; Robin S Dothager; Bryan A Krantz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-02       Impact factor: 11.205

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  9 in total

1.  Refolding upon force quench and pathways of mechanical and thermal unfolding of ubiquitin.

Authors:  Mai Suan Li; Maksim Kouza; Chin-Kun Hu
Journal:  Biophys J       Date:  2006-10-27       Impact factor: 4.033

2.  Folding transition-state and denatured-state ensembles of FSD-1 from folding and unfolding simulations.

Authors:  Hongxing Lei; Shubhra Ghosh Dastidar; Yong Duan
Journal:  J Phys Chem B       Date:  2006-11-02       Impact factor: 2.991

3.  An error analysis for two-state protein-folding kinetic parameters and phi-values: progress toward precision by exploring pH dependencies on Leffler plots.

Authors:  Eva S Cobos; Adela M Candel; Jose C Martinez
Journal:  Biophys J       Date:  2008-01-25       Impact factor: 4.033

4.  Cooperative folding near the downhill limit determined with amino acid resolution by hydrogen exchange.

Authors:  Wookyung Yu; Michael C Baxa; Isabelle Gagnon; Karl F Freed; Tobin R Sosnick
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-13       Impact factor: 11.205

5.  Calcium-dependent folding of single calmodulin molecules.

Authors:  Johannes Stigler; Matthias Rief
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-02       Impact factor: 11.205

6.  Engineered Metal-Binding Sites to Probe Protein Folding Transition States: Psi Analysis.

Authors:  Michael C Baxa; Tobin R Sosnick
Journal:  Methods Mol Biol       Date:  2022

7.  High-Resolution Mapping of the Folding Transition State of a WW Domain.

Authors:  Kapil Dave; Marcus Jäger; Houbi Nguyen; Jeffery W Kelly; Martin Gruebele
Journal:  J Mol Biol       Date:  2016-02-12       Impact factor: 5.469

8.  Psi-constrained simulations of protein folding transition states: implications for calculating.

Authors:  Michael C Baxa; Karl F Freed; Tobin R Sosnick
Journal:  J Mol Biol       Date:  2009-03-06       Impact factor: 5.469

9.  Directly monitor protein rearrangement on a nanosecond-to-millisecond time-scale.

Authors:  Eric H-L Chen; Tony T-Y Lu; Jack C-C Hsu; Yufeng Jane Tseng; T-S Lim; Rita P-Y Chen
Journal:  Sci Rep       Date:  2017-08-18       Impact factor: 4.379

  9 in total

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