Literature DB >> 22753517

Calcium-dependent folding of single calmodulin molecules.

Johannes Stigler1, Matthias Rief.   

Abstract

Calmodulin is the primary calcium binding protein in living cells. Its function and structure depend strongly on calcium concentration. We used single molecule force spectroscopy by optical tweezers to study the folding of calmodulin in the physiologically relevant range. We find that full-length calmodulin switches from a rich and complex folding behavior at high calcium to a simple folding pathway at apo conditions. Using truncation mutants, we studied the individual domains separately. Folding and stability of the individual domains differ significantly at low calcium concentrations. With increasing calcium, the folding rate constants increase while unfolding rate constants decrease. The complete kinetic as well as energetic behavior of both domains could be modeled using a calcium-dependent three-pathway model. We find that the dominant folding pathway at high calcium concentrations proceeds via a transition state capable of binding one calcium ion. The folding of calmodulin seems to be designed to occur fast robustly over a large range of calcium concentrations and hence energetic stabilities.

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Year:  2012        PMID: 22753517      PMCID: PMC3497792          DOI: 10.1073/pnas.1201801109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  The complex folding network of single calmodulin molecules.

Authors:  Johannes Stigler; Fabian Ziegler; Anja Gieseke; J Christof M Gebhardt; Matthias Rief
Journal:  Science       Date:  2011-10-28       Impact factor: 47.728

2.  Phi value versus psi analysis.

Authors:  Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-06       Impact factor: 11.205

3.  Interpretation of protein folding psi values.

Authors:  Christophe Bodenreider; Thomas Kiefhaber
Journal:  J Mol Biol       Date:  2005-08-12       Impact factor: 5.469

4.  Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins.

Authors:  Michael T Woodside; William M Behnke-Parks; Kevan Larizadeh; Kevin Travers; Daniel Herschlag; Steven M Block
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-10       Impact factor: 11.205

5.  Direct observation of active protein folding using lock-in force spectroscopy.

Authors:  Michael Schlierf; Felix Berkemeier; Matthias Rief
Journal:  Biophys J       Date:  2007-08-17       Impact factor: 4.033

6.  Conformational changes of calmodulin upon Ca2+ binding studied with a microfluidic mixer.

Authors:  Hye Yoon Park; Sally A Kim; Jonas Korlach; Elizabeth Rhoades; Lisa W Kwok; Warren R Zipfel; M Neal Waxham; Watt W Webb; Lois Pollack
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-04       Impact factor: 11.205

7.  Exploring the conformation-regulated function of titin kinase by mechanical pump and probe experiments with single molecules.

Authors:  Elias M Puchner; Hermann E Gaub
Journal:  Angew Chem Int Ed Engl       Date:  2010-02-01       Impact factor: 15.336

8.  Structural dynamics in the C-terminal domain of calmodulin at low calcium levels.

Authors:  A Malmendal; J Evenäs; S Forsén; M Akke
Journal:  J Mol Biol       Date:  1999-11-05       Impact factor: 5.469

9.  Kinetics of calcium dissociation from calmodulin and its tryptic fragments. A stopped-flow fluorescence study using Quin 2 reveals a two-domain structure.

Authors:  S R Martin; A Andersson Teleman; P M Bayley; T Drakenberg; S Forsen
Journal:  Eur J Biochem       Date:  1985-09-16

Review 10.  Calmodulin's flexibility allows for promiscuity in its interactions with target proteins and peptides.

Authors:  Aaron P Yamniuk; Hans J Vogel
Journal:  Mol Biotechnol       Date:  2004-05       Impact factor: 2.695

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  28 in total

1.  Interrogating the activities of conformational deformed enzyme by single-molecule fluorescence-magnetic tweezers microscopy.

Authors:  Qing Guo; Yufan He; H Peter Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-28       Impact factor: 11.205

2.  Mechanical Folding and Unfolding of Protein Barnase at the Single-Molecule Level.

Authors:  Anna Alemany; Blanca Rey-Serra; Silvia Frutos; Ciro Cecconi; Felix Ritort
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

3.  Structure-Based Derivation of Protein Folding Intermediates and Energies from Optical Tweezers.

Authors:  Aleksander A Rebane; Lu Ma; Yongli Zhang
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

4.  Direct single-molecule observation of calcium-dependent misfolding in human neuronal calcium sensor-1.

Authors:  Pétur O Heidarsson; Mohsin M Naqvi; Mariela R Otazo; Alessandro Mossa; Birthe B Kragelund; Ciro Cecconi
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-25       Impact factor: 11.205

5.  Single-molecule folding mechanisms of the apo- and Mg(2+)-bound states of human neuronal calcium sensor-1.

Authors:  Mohsin M Naqvi; Pétur O Heidarsson; Mariela R Otazo; Alessandro Mossa; Birthe B Kragelund; Ciro Cecconi
Journal:  Biophys J       Date:  2015-07-07       Impact factor: 4.033

6.  Ligand-induced changes of the apparent transition-state position in mechanical protein unfolding.

Authors:  Johannes Stigler; Matthias Rief
Journal:  Biophys J       Date:  2015-07-21       Impact factor: 4.033

7.  Chemical physics of protein folding.

Authors:  Peter G Wolynes; William A Eaton; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-29       Impact factor: 11.205

8.  Energy landscape views for interplays among folding, binding, and allostery of calmodulin domains.

Authors:  Wenfei Li; Wei Wang; Shoji Takada
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-07       Impact factor: 11.205

9.  Designed protein reveals structural determinants of extreme kinetic stability.

Authors:  Aron Broom; S Martha Ma; Ke Xia; Hitesh Rafalia; Kyle Trainor; Wilfredo Colón; Shachi Gosavi; Elizabeth M Meiering
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-09       Impact factor: 11.205

10.  Cotranslocational processing of the protein substrate calmodulin by an AAA+ unfoldase occurs via unfolding and refolding intermediates.

Authors:  Rafal Augustyniak; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-07       Impact factor: 11.205

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