Literature DB >> 12581664

Protein folding: bringing theory and experiment closer together.

Michele Vendruscolo1, Emanuele Paci.   

Abstract

The ability to perform enzymatic function by harnessing random molecular motion into self-organized protein structures is one of the most fascinating results of evolution. A close interplay between theory and experiment is driving the progress in understanding the principles that determine the behaviour of proteins. New techniques that significantly increase the amount of information obtainable from experimental data have been recently proposed; it is now becoming possible to describe at atomic resolution the events that take place during the folding process. Successful predictions of these events are being reported at an increasing rate and general principles are being outlined.

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Year:  2003        PMID: 12581664     DOI: 10.1016/s0959-440x(03)00007-1

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  11 in total

1.  Calculation of mutational free energy changes in transition states for protein folding.

Authors:  Kresten Lindorff-Larsen; Emanuele Paci; Luis Serrano; Christopher M Dobson; Michele Vendruscolo
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

2.  Phi value versus psi analysis.

Authors:  Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-06       Impact factor: 11.205

3.  The experimental folding landscape of monomeric lactose repressor, a large two-domain protein, involves two kinetic intermediates.

Authors:  Corey J Wilson; Payel Das; Cecilia Clementi; Kathleen S Matthews; Pernilla Wittung-Stafshede
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-03       Impact factor: 11.205

4.  BPPred: a Web-based computational tool for predicting biophysical parameters of proteins.

Authors:  Christian D Geierhaas; Adrian A Nickson; Kresten Lindorff-Larsen; Jane Clarke; Michele Vendruscolo
Journal:  Protein Sci       Date:  2006-11-22       Impact factor: 6.725

5.  An energetic model for macromolecules unfolding in stretching experiments.

Authors:  D De Tommasi; N Millardi; G Puglisi; G Saccomandi
Journal:  J R Soc Interface       Date:  2013-09-18       Impact factor: 4.118

6.  Direct inference of protein-DNA interactions using compressed sensing methods.

Authors:  Mohammed AlQuraishi; Harley H McAdams
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-08       Impact factor: 11.205

Review 7.  Understanding biology by stretching proteins: recent progress.

Authors:  Albert Galera-Prat; Angel Gómez-Sicilia; Andres F Oberhauser; Marek Cieplak; Mariano Carrión-Vázquez
Journal:  Curr Opin Struct Biol       Date:  2010-02-06       Impact factor: 6.809

8.  Characterisation of transition state structures for protein folding using 'high', 'medium' and 'low' {Phi}-values.

Authors:  Christian D Geierhaas; Xavier Salvatella; Jane Clarke; Michele Vendruscolo
Journal:  Protein Eng Des Sel       Date:  2008-03       Impact factor: 1.650

9.  The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins.

Authors:  Barbara Richter; Joerg Gsponer; Péter Várnai; Xavier Salvatella; Michele Vendruscolo
Journal:  J Biomol NMR       Date:  2007-01-16       Impact factor: 2.835

Review 10.  Large conformational changes in proteins: signaling and other functions.

Authors:  Barry J Grant; Alemayehu A Gorfe; J Andrew McCammon
Journal:  Curr Opin Struct Biol       Date:  2010-01-08       Impact factor: 6.809

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