Literature DB >> 15556001

Cross-catalytic replication of an RNA ligase ribozyme.

Dong-Eun Kim1, Gerald F Joyce.   

Abstract

A self-replicating RNA ligase ribozyme was converted to a cross-catalytic format whereby two ribozymes direct each other's synthesis from a total of four component substrates. Each ribozyme binds two RNA substrates and catalyzes their ligation to form the opposing ribozyme. The two ribozymes are not perfectly complementary, as is the case for replicating nucleic acid genomes in biology. Rather, the ribozymes contain both template elements, which are complementary, and catalytic elements, which are identical. The specificity of the template interactions allows the cross-catalytic pathway to dominate over all other reaction pathways. As the concentration of the two ribozymes increases, the rate of formation of additional ribozyme molecules increases, consistent with the overall autocatalytic behavior of the reaction system.

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Year:  2004        PMID: 15556001     DOI: 10.1016/j.chembiol.2004.08.021

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  27 in total

1.  Self-replication reactions dependent on tertiary interaction motifs in an RNA ligase ribozyme.

Authors:  Rei Ohmori; Hirohide Saito; Yoshiya Ikawa; Yoshihiko Fujita; Tan Inoue
Journal:  J Mol Evol       Date:  2011-11-12       Impact factor: 2.395

Review 2.  Closing the circle: replicating RNA with RNA.

Authors:  Leslie K L Cheng; Peter J Unrau
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-16       Impact factor: 10.005

Review 3.  Intramolecular RNA replicase: possibly the first self-replicating molecule in the RNA world.

Authors:  Wentao Ma; Chunwu Yu
Journal:  Orig Life Evol Biosph       Date:  2006-08-15       Impact factor: 1.950

4.  Back to the future of nucleic acid self-amplification.

Authors:  Andrew D Ellington
Journal:  Nat Chem Biol       Date:  2009-04       Impact factor: 15.040

5.  Highly efficient self-replicating RNA enzymes.

Authors:  Michael P Robertson; Gerald F Joyce
Journal:  Chem Biol       Date:  2014-01-02

Review 6.  Evolution in an RNA world.

Authors:  G F Joyce
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2009-08-10

7.  Autocatalytic Sets and RNA Secondary Structure.

Authors:  Wim Hordijk
Journal:  J Mol Evol       Date:  2017-04-04       Impact factor: 2.395

8.  Spontaneous network formation among cooperative RNA replicators.

Authors:  Nilesh Vaidya; Michael L Manapat; Irene A Chen; Ramon Xulvi-Brunet; Eric J Hayden; Niles Lehman
Journal:  Nature       Date:  2012-10-17       Impact factor: 49.962

9.  Kinetic properties of an RNA enzyme that undergoes self-sustained exponential amplification.

Authors:  Antonio C Ferretti; Gerald F Joyce
Journal:  Biochemistry       Date:  2013-02-05       Impact factor: 3.162

10.  Efficient inhibition of hepatitis B virus replication by hepatitis delta virus ribozymes delivered by targeting retrovirus.

Authors:  Chuan-Xi Wang; Yan-Qin Lu; Peng Qi; Long-Hua Chen; Jin-Xiang Han
Journal:  Virol J       Date:  2010-03-17       Impact factor: 4.099

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