Literature DB >> 16909330

Intramolecular RNA replicase: possibly the first self-replicating molecule in the RNA world.

Wentao Ma1, Chunwu Yu.   

Abstract

Although there is more and more evidence suggested the existence of an RNA World during the origin of life, the scenario concerning the origin of the RNA World remains blurry. Usually it is speculated that it originated from a prebiotic nucleotide pool, during which a self-replicating RNA synthesis ribozyme may have emerged as the first ribozyme - the RNA replicase. However, there is yet no ersuasive supposition for the mechanism for the self-favouring feature of the replicase, thus the speculation remains unconvincing. Here we suggest that intramolecular catalysis is a possible solution. Two RNA synthesis ribozymes may be integrated into one RNA molecule, as two functional domains which could catalyze the copy of each other. Thus the RNA molecule could self-replicate and be referred to as "intramolecular replicase" here. Computational simulation to get insight into the dynamic mechanism of emergence of the intramolecular replicase from a nucleotide pool is valuable and would be included in a following work of our group.

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Year:  2006        PMID: 16909330     DOI: 10.1007/s11084-005-9006-1

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  26 in total

1.  A complex ligase ribozyme evolved in vitro from a group I ribozyme domain.

Authors:  L Jaeger; M C Wright; G F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

Review 2.  Spatial models of prebiotic evolution: soup before pizza?

Authors:  István Scheuring; Tamás Czárán; Péter Szabó; György Károlyi; Zoltán Toroczkai
Journal:  Orig Life Evol Biosph       Date:  2003-10       Impact factor: 1.950

Review 3.  The antiquity of RNA-based evolution.

Authors:  Gerald F Joyce
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

4.  In silico simulations reveal that replicators with limited dispersal evolve towards higher efficiency and fidelity.

Authors:  Péter Szabó; István Scheuring; Tamás Czárán; Eörs Szathmáry
Journal:  Nature       Date:  2002-11-21       Impact factor: 49.962

5.  Cross-catalytic replication of an RNA ligase ribozyme.

Authors:  Dong-Eun Kim; Gerald F Joyce
Journal:  Chem Biol       Date:  2004-11

6.  Computational studies on conditions of the emergence of autopoietic protocells.

Authors:  Naoaki Ono
Journal:  Biosystems       Date:  2005-09       Impact factor: 1.973

7.  Synthesis of long prebiotic oligomers on mineral surfaces.

Authors:  J P Ferris; A R Hill; R Liu; L E Orgel
Journal:  Nature       Date:  1996-05-02       Impact factor: 49.962

8.  Montmorillonite, oligonucleotides, RNA and origin of life.

Authors:  Gözen Ertem
Journal:  Orig Life Evol Biosph       Date:  2004-12       Impact factor: 1.950

Review 9.  Prebiotic chemistry and the origin of the RNA world.

Authors:  Leslie E Orgel
Journal:  Crit Rev Biochem Mol Biol       Date:  2004 Mar-Apr       Impact factor: 8.250

Review 10.  Folding and activity of the hammerhead ribozyme.

Authors:  Christian Hammann; David M J Lilley
Journal:  Chembiochem       Date:  2002-08-02       Impact factor: 3.164

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  6 in total

1.  Self-replication: spelling it out in a chemical background.

Authors:  Wentao Ma; Chunwu Yu; Wentao Zhang; Ping Zhou; Jiming Hu
Journal:  Theory Biosci       Date:  2010-12-21       Impact factor: 1.919

2.  Nucleotide synthetase ribozymes may have emerged first in the RNA world.

Authors:  Wentao Ma; Chunwu Yu; Wentao Zhang; Jiming Hu
Journal:  RNA       Date:  2007-09-18       Impact factor: 4.942

3.  There is no common ground between science and religion.

Authors:  Antonio G Valdecasas; Luis Boto; Ana Maria Correas
Journal:  J Biosci       Date:  2013-06       Impact factor: 1.826

4.  Protocells: at the interface of life and non-life.

Authors:  Wentao Ma; Yu Feng
Journal:  Life (Basel)       Date:  2015-02-09

5.  What Does "the RNA World" Mean to "the Origin of Life"?

Authors:  Wentao Ma
Journal:  Life (Basel)       Date:  2017-11-29

6.  Tag mechanism as a strategy for the RNA replicase to resist parasites in the RNA world.

Authors:  Sanmao Wu; Chunwu Yu; Wentao Zhang; Shaolin Yin; Yong Chen; Yu Feng; Wentao Ma
Journal:  PLoS One       Date:  2017-03-02       Impact factor: 3.240

  6 in total

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