Literature DB >> 23075853

Spontaneous network formation among cooperative RNA replicators.

Nilesh Vaidya1, Michael L Manapat, Irene A Chen, Ramon Xulvi-Brunet, Eric J Hayden, Niles Lehman.   

Abstract

The origins of life on Earth required the establishment of self-replicating chemical systems capable of maintaining and evolving biological information. In an RNA world, single self-replicating RNAs would have faced the extreme challenge of possessing a mutation rate low enough both to sustain their own information and to compete successfully against molecular parasites with limited evolvability. Thus theoretical analyses suggest that networks of interacting molecules were more likely to develop and sustain life-like behaviour. Here we show that mixtures of RNA fragments that self-assemble into self-replicating ribozymes spontaneously form cooperative catalytic cycles and networks. We find that a specific three-membered network has highly cooperative growth dynamics. When such cooperative networks are competed directly against selfish autocatalytic cycles, the former grow faster, indicating an intrinsic ability of RNA populations to evolve greater complexity through cooperation. We can observe the evolvability of networks through in vitro selection. Our experiments highlight the advantages of cooperative behaviour even at the molecular stages of nascent life.

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Year:  2012        PMID: 23075853     DOI: 10.1038/nature11549

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  27 in total

1.  Cross-catalytic replication of an RNA ligase ribozyme.

Authors:  Dong-Eun Kim; Gerald F Joyce
Journal:  Chem Biol       Date:  2004-11

2.  Self-assembly of a group I intron from inactive oligonucleotide fragments.

Authors:  Eric J Hayden; Niles Lehman
Journal:  Chem Biol       Date:  2006-08

Review 3.  Forty years of in vitro evolution.

Authors:  Gerald F Joyce
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

4.  Prevolutionary dynamics and the origin of evolution.

Authors:  Martin A Nowak; Hisashi Ohtsuki
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-12       Impact factor: 11.205

Review 5.  Autocatalytic networks: the transition from molecular self-replication to molecular ecosystems.

Authors:  D H Lee; K Severin; M R Ghadiri
Journal:  Curr Opin Chem Biol       Date:  1997-12       Impact factor: 8.822

6.  Ribozyme-catalyzed transcription of an active ribozyme.

Authors:  Aniela Wochner; James Attwater; Alan Coulson; Philipp Holliger
Journal:  Science       Date:  2011-04-08       Impact factor: 47.728

7.  Group selection of early replicators and the origin of life.

Authors:  E Szathmáry; L Demeter
Journal:  J Theor Biol       Date:  1987-10-21       Impact factor: 2.691

8.  Hypercycles and the origin of life.

Authors:  J M Smith
Journal:  Nature       Date:  1979-08-09       Impact factor: 49.962

9.  The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle.

Authors:  M Eigen; P Schuster
Journal:  Naturwissenschaften       Date:  1977-11

10.  Self-replication of complementary nucleotide-based oligomers.

Authors:  D Sievers; G von Kiedrowski
Journal:  Nature       Date:  1994-05-19       Impact factor: 49.962

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  109 in total

1.  Intramolecular phenotypic capacitance in a modular RNA molecule.

Authors:  Eric J Hayden; Devin P Bendixsen; Andreas Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-23       Impact factor: 11.205

Review 2.  Evolution of Autocatalytic Sets in Computational Models of Chemical Reaction Networks.

Authors:  Wim Hordijk
Journal:  Orig Life Evol Biosph       Date:  2015-10-23       Impact factor: 1.950

Review 3.  Rethinking quasispecies theory: From fittest type to cooperative consortia.

Authors:  Luis P Villarreal; Guenther Witzany
Journal:  World J Biol Chem       Date:  2013-11-26

4.  Scaling down DNA circuits with competitive neural networks.

Authors:  Anthony J Genot; Teruo Fujii; Yannick Rondelez
Journal:  J R Soc Interface       Date:  2013-06-12       Impact factor: 4.118

5.  An RNA polymerase ribozyme that synthesizes its own ancestor.

Authors:  Katrina F Tjhung; Maxim N Shokhirev; David P Horning; Gerald F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-27       Impact factor: 11.205

6.  Conditions for evolvability of autocatalytic sets: a formal example and analysis.

Authors:  Wim Hordijk; Mike Steel
Journal:  Orig Life Evol Biosph       Date:  2014-12-05       Impact factor: 1.950

7.  When Competing Viruses Unify: Evolution, Conservation, and Plasticity of Genetic Identities.

Authors:  Luis P Villarreal; Guenther Witzany
Journal:  J Mol Evol       Date:  2015-05-27       Impact factor: 2.395

Review 8.  The RNA World: molecular cooperation at the origins of life.

Authors:  Paul G Higgs; Niles Lehman
Journal:  Nat Rev Genet       Date:  2014-11-11       Impact factor: 53.242

Review 9.  The ribosome challenge to the RNA world.

Authors:  Jessica C Bowman; Nicholas V Hud; Loren Dean Williams
Journal:  J Mol Evol       Date:  2015-03-05       Impact factor: 2.395

10.  Kinetic properties of an RNA enzyme that undergoes self-sustained exponential amplification.

Authors:  Antonio C Ferretti; Gerald F Joyce
Journal:  Biochemistry       Date:  2013-02-05       Impact factor: 3.162

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