Literature DB >> 19667013

Evolution in an RNA world.

G F Joyce1.   

Abstract

A long-standing research goal has been to develop a self-sustained chemical system that is capable of undergoing Darwinian evolution. The notion of primitive RNA-based life suggests that this goal might be achieved by constructing an RNA enzyme that catalyzes the replication of RNA molecules, including the RNA enzyme itself. This reaction was demonstrated recently in a cross-catalytic system involving two RNA enzymes that catalyze each other's synthesis from a total of four component substrates. The cross-replicating RNA enzymes undergo self-sustained exponential amplification at a constant temperature in the absence of proteins or other biological materials. Amplification occurs with a doubling time of approximately 1 hour and can be continued indefinitely. Small populations of cross-replicating RNA enzymes can be made to compete for limited resources within a common environment. The molecules reproduce with high fidelity but occasionally give rise to recombinants that also can replicate. Over the course of many "generations" of selective amplification, novel variants arise and grow to dominate the population based on their relative fitness under the chosen reaction conditions. This is the first example, outside of biology, of evolutionary adaptation in a molecular genetic system.

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Year:  2009        PMID: 19667013      PMCID: PMC2891321          DOI: 10.1101/sqb.2009.74.004

Source DB:  PubMed          Journal:  Cold Spring Harb Symp Quant Biol        ISSN: 0091-7451


  22 in total

1.  Cooperative binding of effectors by an allosteric ribozyme.

Authors:  A M Jose; G A Soukup; R R Breaker
Journal:  Nucleic Acids Res       Date:  2001-04-01       Impact factor: 16.971

2.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

3.  A self-replicating ligase ribozyme.

Authors:  Natasha Paul; Gerald F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-18       Impact factor: 11.205

4.  Amplification, mutation and selection of catalytic RNA.

Authors:  G F Joyce
Journal:  Gene       Date:  1989-10-15       Impact factor: 3.688

5.  Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication.

Authors:  J C Guatelli; K M Whitfield; D Y Kwoh; K J Barringer; D D Richman; T R Gingeras
Journal:  Proc Natl Acad Sci U S A       Date:  1990-03       Impact factor: 11.205

6.  Nonenzymatic template-directed synthesis of informational macromolecules.

Authors:  G F Joyce
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987

7.  The development of enzyme catalytic efficiency: an experimental approach.

Authors:  J D Hermes; S C Blacklow; J R Knowles
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987

8.  The origin of the genetic code.

Authors:  F H Crick
Journal:  J Mol Biol       Date:  1968-12       Impact factor: 5.469

9.  Control of gene expression by a natural metabolite-responsive ribozyme.

Authors:  Wade C Winkler; Ali Nahvi; Adam Roth; Jennifer A Collins; Ronald R Breaker
Journal:  Nature       Date:  2004-03-18       Impact factor: 49.962

10.  Autocatalytic aptazymes enable ligand-dependent exponential amplification of RNA.

Authors:  Bianca J Lam; Gerald F Joyce
Journal:  Nat Biotechnol       Date:  2009-02-22       Impact factor: 54.908

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  2 in total

1.  The paradox of dual roles in the RNA world: resolving the conflict between stable folding and templating ability.

Authors:  Nikola A Ivica; Benedikt Obermayer; Gregory W Campbell; Sudha Rajamani; Ulrich Gerland; Irene A Chen
Journal:  J Mol Evol       Date:  2013-09       Impact factor: 2.395

2.  Oligomerization of a Bimolecular Ribozyme Modestly Rescues its Structural Defects that Disturb Interdomain Assembly to Form the Catalytic Site.

Authors:  Md Motiar Rahman; Shigeyoshi Matsumura; Yoshiya Ikawa
Journal:  J Mol Evol       Date:  2018-08-14       Impact factor: 2.395

  2 in total

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