Literature DB >> 20554706

Closing the circle: replicating RNA with RNA.

Leslie K L Cheng1, Peter J Unrau.   

Abstract

How life emerged on this planet is one of the most important and fundamental questions of science. Although nearly all details concerning our origins have been lost in the depths of time, there is compelling evidence to suggest that the earliest life might have exploited the catalytic and self-recognition properties of RNA to survive. If an RNA based replicating system could be constructed in the laboratory, it would be much easier to understand the challenges associated with the very earliest steps in evolution and provide important insight into the establishment of the complex metabolic systems that now dominate this planet. Recent progress into the selection and characterization of ribozymes that promote nucleotide synthesis and RNA polymerization are discussed and outstanding problems in the field of RNA-mediated RNA replication are summarized.

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Year:  2010        PMID: 20554706      PMCID: PMC2944364          DOI: 10.1101/cshperspect.a002204

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  78 in total

1.  Constructing an RNA world.

Authors:  D P Bartel; P J Unrau
Journal:  Trends Cell Biol       Date:  1999-12       Impact factor: 20.808

2.  A complex ligase ribozyme evolved in vitro from a group I ribozyme domain.

Authors:  L Jaeger; M C Wright; G F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

3.  Versatile 5' phosphoryl coupling of small and large molecules to an RNA.

Authors:  F Huang; M Yarus
Journal:  Proc Natl Acad Sci U S A       Date:  1997-08-19       Impact factor: 11.205

4.  In vitro selection of an allosteric ribozyme that transduces analytes to amplicons.

Authors:  M P Robertson; A D Ellington
Journal:  Nat Biotechnol       Date:  1999-01       Impact factor: 54.908

Review 5.  The origin of life--a review of facts and speculations.

Authors:  L E Orgel
Journal:  Trends Biochem Sci       Date:  1998-12       Impact factor: 13.807

6.  Protein-primed RNA synthesis by purified poliovirus RNA polymerase.

Authors:  A V Paul; J H van Boom; D Filippov; E Wimmer
Journal:  Nature       Date:  1998-05-21       Impact factor: 49.962

7.  Synthesis of long prebiotic oligomers on mineral surfaces.

Authors:  J P Ferris; A R Hill; R Liu; L E Orgel
Journal:  Nature       Date:  1996-05-02       Impact factor: 49.962

8.  RNA-catalysed RNA polymerization using nucleoside triphosphates.

Authors:  E H Ekland; D P Bartel
Journal:  Nature       Date:  1996-07-25       Impact factor: 49.962

9.  RNA-catalysed nucleotide synthesis.

Authors:  P J Unrau; D P Bartel
Journal:  Nature       Date:  1998-09-17       Impact factor: 49.962

10.  Man-made cell-like compartments for molecular evolution.

Authors:  D S Tawfik; A D Griffiths
Journal:  Nat Biotechnol       Date:  1998-07       Impact factor: 54.908

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  20 in total

Review 1.  Rethinking quasispecies theory: From fittest type to cooperative consortia.

Authors:  Luis P Villarreal; Guenther Witzany
Journal:  World J Biol Chem       Date:  2013-11-26

2.  The paradox of dual roles in the RNA world: resolving the conflict between stable folding and templating ability.

Authors:  Nikola A Ivica; Benedikt Obermayer; Gregory W Campbell; Sudha Rajamani; Ulrich Gerland; Irene A Chen
Journal:  J Mol Evol       Date:  2013-09       Impact factor: 2.395

3.  Polymerase ribozyme efficiency increased by G/T-rich DNA oligonucleotides.

Authors:  Chengguo Yao; Ulrich F Müller
Journal:  RNA       Date:  2011-05-27       Impact factor: 4.942

Review 4.  The RNA World: molecular cooperation at the origins of life.

Authors:  Paul G Higgs; Niles Lehman
Journal:  Nat Rev Genet       Date:  2014-11-11       Impact factor: 53.242

5.  Oligomerization of a Bimolecular Ribozyme Modestly Rescues its Structural Defects that Disturb Interdomain Assembly to Form the Catalytic Site.

Authors:  Md Motiar Rahman; Shigeyoshi Matsumura; Yoshiya Ikawa
Journal:  J Mol Evol       Date:  2018-08-14       Impact factor: 2.395

Review 6.  Pragmatic turn in biology: From biological molecules to genetic content operators.

Authors:  Guenther Witzany
Journal:  World J Biol Chem       Date:  2014-08-26

7.  Aptamers: problems, solutions and prospects.

Authors:  A V Lakhin; V Z Tarantul; L V Gening
Journal:  Acta Naturae       Date:  2013-10       Impact factor: 1.845

8.  Host-parasite oscillation dynamics and evolution in a compartmentalized RNA replication system.

Authors:  Yohsuke Bansho; Taro Furubayashi; Norikazu Ichihashi; Tetsuya Yomo
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-28       Impact factor: 11.205

Review 9.  Social Networking of Quasi-Species Consortia drive Virolution via Persistence.

Authors:  Luis P Villarreal; Guenther Witzany
Journal:  AIMS Microbiol       Date:  2021-04-30

10.  The origin of life is a spatially localized stochastic transition.

Authors:  Meng Wu; Paul G Higgs
Journal:  Biol Direct       Date:  2012-11-24       Impact factor: 4.540

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