Literature DB >> 15547132

The driving force for molecular evolution of translation.

Harry F Noller1.   

Abstract

It is widely argued that protein synthesis evolved out of an RNA world, in which catalytic and other biological functions now carried out by proteins were performed by RNAs. However, it is not clear what selective advantage would have provided the driving force for evolution of a primitive translation apparatus, because of the unlikelihood that rudimentary polypeptides would have contributed sufficiently useful biological functions. Here, I suggest that the availability of even simple peptides could have significantly enlarged the otherwise limited structure space of RNA. In other words, translation initially evolved not to create a protein world, but to extend the structural, and therefore the functional, capabilities of the RNA world. Observed examples of substantial structural rearrangements in RNA that are induced by binding of peptides and other small molecules support this possibility.

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Year:  2004        PMID: 15547132      PMCID: PMC1370670          DOI: 10.1261/rna.7142404

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  33 in total

1.  Crystal structure of the ribosome at 5.5 A resolution.

Authors:  M M Yusupov; G Z Yusupova; A Baucom; K Lieberman; T N Earnest; J H Cate; H F Noller
Journal:  Science       Date:  2001-03-29       Impact factor: 47.728

2.  Ribozyme-catalyzed tRNA aminoacylation.

Authors:  N Lee; Y Bessho; K Wei; J W Szostak; H Suga
Journal:  Nat Struct Biol       Date:  2000-01

3.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

4.  RNA-catalyzed amino acid activation.

Authors:  R K Kumar; M Yarus
Journal:  Biochemistry       Date:  2001-06-19       Impact factor: 3.162

5.  Recognition of cognate transfer RNA by the 30S ribosomal subunit.

Authors:  J M Ogle; D E Brodersen; W M Clemons ; M J Tarry; A P Carter; V Ramakrishnan
Journal:  Science       Date:  2001-05-04       Impact factor: 47.728

6.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

Review 7.  A new biology for a new century.

Authors:  Carl R Woese
Journal:  Microbiol Mol Biol Rev       Date:  2004-06       Impact factor: 11.056

Review 8.  Gene regulation by riboswitches.

Authors:  Maumita Mandal; Ronald R Breaker
Journal:  Nat Rev Mol Cell Biol       Date:  2004-06       Impact factor: 94.444

9.  Anchoring an extended HTLV-1 Rex peptide within an RNA major groove containing junctional base triples.

Authors:  F Jiang; A Gorin; W Hu; A Majumdar; S Baskerville; W Xu; A Ellington; D J Patel
Journal:  Structure       Date:  1999-12-15       Impact factor: 5.006

10.  Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex.

Authors:  J L Battiste; H Mao; N S Rao; R Tan; D R Muhandiram; L E Kay; A D Frankel; J R Williamson
Journal:  Science       Date:  1996-09-13       Impact factor: 47.728

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  38 in total

1.  The transition from noncoded to coded protein synthesis: did coding mRNAs arise from stability-enhancing binding partners to tRNA?

Authors:  Harold Stephen Bernhardt; Warren Perry Tate
Journal:  Biol Direct       Date:  2010-04-09       Impact factor: 4.540

2.  Evolution of protein synthesis from an RNA world.

Authors:  Harry F Noller
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-04-01       Impact factor: 10.005

3.  Does the Ribosome Challenge our Understanding of the RNA World?

Authors:  Anthony M Poole; Daniel C Jeffares; Marc P Hoeppner; David Penny
Journal:  J Mol Evol       Date:  2015-11-18       Impact factor: 2.395

4.  RNA-based affinity purification reveals 7SK RNPs with distinct composition and regulation.

Authors:  J Robert Hogg; Kathleen Collins
Journal:  RNA       Date:  2007-04-24       Impact factor: 4.942

5.  A model for the origin of protein synthesis as coreplicational scanning of nascent RNA.

Authors:  Alexander V Yakhnin
Journal:  Orig Life Evol Biosph       Date:  2007-09-20       Impact factor: 1.950

6.  Structural relationships among the ribosomal stalk proteins from the three domains of life.

Authors:  Przemysław Grela; Pau Bernadó; Dmitri Svergun; Jan Kwiatowski; Dariusz Abramczyk; Nikodem Grankowski; Marek Tchórzewski
Journal:  J Mol Evol       Date:  2008-07-09       Impact factor: 2.395

7.  A realistic model under which the genetic code is optimal.

Authors:  Harry Buhrman; Peter T S van der Gulik; Gunnar W Klau; Christian Schaffner; Dave Speijer; Leen Stougie
Journal:  J Mol Evol       Date:  2013-07-23       Impact factor: 2.395

Review 8.  The protein invasion: a broad review on the origin of the translational system.

Authors:  David W Morgens
Journal:  J Mol Evol       Date:  2013-10-22       Impact factor: 2.395

Review 9.  Structural aspects of translation termination on the ribosome.

Authors:  Andrei A Korostelev
Journal:  RNA       Date:  2011-06-23       Impact factor: 4.942

Review 10.  Structured non-coding RNAs and the RNP Renaissance.

Authors:  J Robert Hogg; Kathleen Collins
Journal:  Curr Opin Chem Biol       Date:  2008-10-23       Impact factor: 8.822

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