Literature DB >> 18950732

Structured non-coding RNAs and the RNP Renaissance.

J Robert Hogg1, Kathleen Collins.   

Abstract

Non-protein-coding (nc) RNAs are diverse in their modes of synthesis, processing, assembly, and function. The inventory of transcripts known or suspected to serve their biological roles as RNA has increased dramatically in recent years. Although studies of ncRNA function are only beginning to match the pace of ncRNA discovery, some principles are emerging. Here we focus on a framework for understanding functions of ncRNAs that have evolved in a protein-rich cellular environment, as distinct from ncRNAs that arose originally in the ancestral RNA World. The folding and function of ncRNAs in the context of ribonucleoprotein (RNP) complexes provide myriad opportunities for ncRNA gain of function, leading to a modern-day RNP Renaissance.

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Year:  2008        PMID: 18950732      PMCID: PMC2633442          DOI: 10.1016/j.cbpa.2008.09.027

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  44 in total

Review 1.  The expanding RNA polymerase III transcriptome.

Authors:  Giorgio Dieci; Gloria Fiorino; Manuele Castelnuovo; Martin Teichmann; Aldo Pagano
Journal:  Trends Genet       Date:  2007-10-30       Impact factor: 11.639

Review 2.  The growing catalog of small RNAs and their association with distinct Argonaute/Piwi family members.

Authors:  Thalia A Farazi; Stefan A Juranek; Thomas Tuschl
Journal:  Development       Date:  2008-02-20       Impact factor: 6.868

Review 3.  Tethering of proteins to RNAs by bacteriophage proteins.

Authors:  Cecile Keryer-Bibens; Carine Barreau; H Beverley Osborne
Journal:  Biol Cell       Date:  2008-02       Impact factor: 4.458

4.  The eukaryotic genome as an RNA machine.

Authors:  Paulo P Amaral; Marcel E Dinger; Tim R Mercer; John S Mattick
Journal:  Science       Date:  2008-03-28       Impact factor: 47.728

5.  Arthropod 7SK RNA.

Authors:  Andreas R Gruber; Carsten Kilgus; Axel Mosig; Ivo L Hofacker; Wolfgang Hennig; Peter F Stadler
Journal:  Mol Biol Evol       Date:  2008-06-19       Impact factor: 16.240

6.  Regulation of histone H4 Lys16 acetylation by predicted alternative secondary structures in roX noncoding RNAs.

Authors:  Seung-Won Park; Mitzi I Kuroda; Yongkyu Park
Journal:  Mol Cell Biol       Date:  2008-06-09       Impact factor: 4.272

Review 7.  Physiological assembly and activity of human telomerase complexes.

Authors:  Kathleen Collins
Journal:  Mech Ageing Dev       Date:  2007-10-30       Impact factor: 5.432

8.  Human Y5 RNA specializes a Ro ribonucleoprotein for 5S ribosomal RNA quality control.

Authors:  J Robert Hogg; Kathleen Collins
Journal:  Genes Dev       Date:  2007-12-01       Impact factor: 11.361

9.  Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription.

Authors:  Xiangting Wang; Shigeki Arai; Xiaoyuan Song; Donna Reichart; Kun Du; Gabriel Pascual; Paul Tempst; Michael G Rosenfeld; Christopher K Glass; Riki Kurokawa
Journal:  Nature       Date:  2008-05-28       Impact factor: 49.962

10.  Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock.

Authors:  Peter D Mariner; Ryan D Walters; Celso A Espinoza; Linda F Drullinger; Stacey D Wagner; Jennifer F Kugel; James A Goodrich
Journal:  Mol Cell       Date:  2008-02-29       Impact factor: 17.970

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  22 in total

Review 1.  Telomerase: an RNP enzyme synthesizes DNA.

Authors:  Elizabeth H Blackburn; Kathleen Collins
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-05-01       Impact factor: 10.005

2.  Nematode sbRNAs: homologs of vertebrate Y RNAs.

Authors:  Ilenia Boria; Andreas R Gruber; Andrea Tanzer; Stephan H Bernhart; Ronny Lorenz; Michael M Mueller; Ivo L Hofacker; Peter F Stadler
Journal:  J Mol Evol       Date:  2010-03-27       Impact factor: 2.395

Review 3.  Polycomb group proteins: navigators of lineage pathways led astray in cancer.

Authors:  Adrian P Bracken; Kristian Helin
Journal:  Nat Rev Cancer       Date:  2009-11       Impact factor: 60.716

4.  Dynamic interaction of Y RNAs with chromatin and initiation proteins during human DNA replication.

Authors:  Alice Tianbu Zhang; Alexander R Langley; Christo P Christov; Eyemen Kheir; Thomas Shafee; Timothy J Gardiner; Torsten Krude
Journal:  J Cell Sci       Date:  2011-05-24       Impact factor: 5.285

5.  The midblastula transition defines the onset of Y RNA-dependent DNA replication in Xenopus laevis.

Authors:  Clara Collart; Christo P Christov; James C Smith; Torsten Krude
Journal:  Mol Cell Biol       Date:  2011-07-26       Impact factor: 4.272

6.  Sequence-Based Prediction of RNA-Binding Residues in Proteins.

Authors:  Rasna R Walia; Yasser El-Manzalawy; Vasant G Honavar; Drena Dobbs
Journal:  Methods Mol Biol       Date:  2017

7.  Fragment-based modelling of single stranded RNA bound to RNA recognition motif containing proteins.

Authors:  Isaure Chauvot de Beauchene; Sjoerd J de Vries; Martin Zacharias
Journal:  Nucleic Acids Res       Date:  2016-04-29       Impact factor: 16.971

8.  A conserved motif of vertebrate Y RNAs essential for chromosomal DNA replication.

Authors:  Timothy J Gardiner; Christo P Christov; Alexander R Langley; Torsten Krude
Journal:  RNA       Date:  2009-05-27       Impact factor: 4.942

Review 9.  Structure and function of the T-loop structural motif in noncoding RNAs.

Authors:  Clarence W Chan; Bhaskar Chetnani; Alfonso Mondragón
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-06-10       Impact factor: 9.957

Review 10.  Noncoding RNA Surveillance: The Ends Justify the Means.

Authors:  Cedric Belair; Soyeong Sim; Sandra L Wolin
Journal:  Chem Rev       Date:  2017-10-12       Impact factor: 60.622

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