Literature DB >> 15542822

Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II.

Marc A Schwabish1, Kevin Struhl.   

Abstract

Biochemical experiments indicate that transcriptional elongation by RNA polymerase II (Pol II) is inhibited by nucleosomes and hence requires chromatin-modifying activities. Here, we examine the fate of histones upon passage of elongating Pol II in vivo. Histone density throughout the entire Saccharomyces cerevisiae GAL10 coding region is inversely correlated with Pol II association and transcriptional activity, suggesting that the elongating Pol II machinery efficiently evicts core histones from the DNA. Furthermore, new histones appear to be deposited onto DNA less than 1 min after passage of Pol II. Transcription-dependent deposition of histones requires the FACT complex that travels with elongating Pol II. Our results suggest that Pol II transcription generates a highly dynamic equilibrium of histone eviction and histone deposition and that there is significant histone exchange throughout most of the yeast genome within a single cell cycle.

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Year:  2004        PMID: 15542822      PMCID: PMC529037          DOI: 10.1128/MCB.24.23.10111-10117.2004

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  55 in total

1.  Histone acetylation at promoters is differentially affected by specific activators and repressors.

Authors:  J Deckert; K Struhl
Journal:  Mol Cell Biol       Date:  2001-04       Impact factor: 4.272

2.  Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex.

Authors:  Huck Hui Ng; François Robert; Richard A Young; Kevin Struhl
Journal:  Genes Dev       Date:  2002-04-01       Impact factor: 11.361

3.  Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.

Authors:  Maria L Kireeva; Wendy Walter; Vladimir Tchernajenko; Vladimir Bondarenko; Mikhail Kashlev; Vasily M Studitsky
Journal:  Mol Cell       Date:  2002-03       Impact factor: 17.970

4.  The genome-wide localization of Rsc9, a component of the RSC chromatin-remodeling complex, changes in response to stress.

Authors:  Marc Damelin; Itamar Simon; Terence I Moy; Boris Wilson; Suzanne Komili; Paul Tempst; Frederick P Roth; Richard A Young; Bradley R Cairns; Pamela A Silver
Journal:  Mol Cell       Date:  2002-03       Impact factor: 17.970

5.  TREX is a conserved complex coupling transcription with messenger RNA export.

Authors:  Katja Strässer; Seiji Masuda; Paul Mason; Jens Pfannstiel; Marisa Oppizzi; Susana Rodriguez-Navarro; Ana G Rondón; Andres Aguilera; Kevin Struhl; Robin Reed; Ed Hurt
Journal:  Nature       Date:  2002-04-28       Impact factor: 49.962

Review 6.  ATP-dependent nucleosome remodeling.

Authors:  Peter B Becker; Wolfram Hörz
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

7.  Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription.

Authors:  P Komarnitsky; E J Cho; S Buratowski
Journal:  Genes Dev       Date:  2000-10-01       Impact factor: 11.361

8.  Ubiquitination of histone H2B by Rad6 is required for efficient Dot1-mediated methylation of histone H3 lysine 79.

Authors:  Huck Hui Ng; Rui-Ming Xu; Yi Zhang; Kevin Struhl
Journal:  J Biol Chem       Date:  2002-08-06       Impact factor: 5.157

9.  The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly.

Authors:  Kami Ahmad; Steven Henikoff
Journal:  Mol Cell       Date:  2002-06       Impact factor: 17.970

10.  RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach.

Authors:  Nevan J Krogan; Minkyu Kim; Seong Hoon Ahn; Guoqing Zhong; Michael S Kobor; Gerard Cagney; Andrew Emili; Ali Shilatifard; Stephen Buratowski; Jack F Greenblatt
Journal:  Mol Cell Biol       Date:  2002-10       Impact factor: 4.272

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  190 in total

1.  Genome-wide function of H2B ubiquitylation in promoter and genic regions.

Authors:  Kiran Batta; Zhenhai Zhang; Kuangyu Yen; David B Goffman; B Franklin Pugh
Journal:  Genes Dev       Date:  2011-11-01       Impact factor: 11.361

2.  Dynamic loss of H2B ubiquitylation without corresponding changes in H3K4 trimethylation during myogenic differentiation.

Authors:  Vasupradha Vethantham; Yan Yang; Christopher Bowman; Patrik Asp; Jeong-Heon Lee; David G Skalnik; Brian D Dynlacht
Journal:  Mol Cell Biol       Date:  2012-01-17       Impact factor: 4.272

3.  Promoter strength influences the S phase requirement for establishment of silencing at the Saccharomyces cerevisiae silent mating type Loci.

Authors:  Jie Ren; Chia-Lin Wang; Rolf Sternglanz
Journal:  Genetics       Date:  2010-08-02       Impact factor: 4.562

4.  Histone Sin mutations promote nucleosome traversal and histone displacement by RNA polymerase II.

Authors:  Fu-Kai Hsieh; Michael Fisher; Andrea Ujvári; Vasily M Studitsky; Donal S Luse
Journal:  EMBO Rep       Date:  2010-08-13       Impact factor: 8.807

Review 5.  Inducible gene expression: diverse regulatory mechanisms.

Authors:  Vikki M Weake; Jerry L Workman
Journal:  Nat Rev Genet       Date:  2010-04-27       Impact factor: 53.242

6.  Transcriptional activity affects the H3K4me3 level and distribution in the coding region.

Authors:  Cindy Yen Okitsu; John Cheng Feng Hsieh; Chih-Lin Hsieh
Journal:  Mol Cell Biol       Date:  2010-04-19       Impact factor: 4.272

7.  RNA polymerase complexes cooperate to relieve the nucleosomal barrier and evict histones.

Authors:  Olga I Kulaeva; Fu-Kai Hsieh; Vasily M Studitsky
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-07       Impact factor: 11.205

8.  Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3'-end formation.

Authors:  Xiaochun Fan; Zarmik Moqtaderi; Yi Jin; Yong Zhang; X Shirley Liu; Kevin Struhl
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

9.  Dominant mutants of the Saccharomyces cerevisiae ASF1 histone chaperone bypass the need for CAF-1 in transcriptional silencing by altering histone and Sir protein recruitment.

Authors:  Beth A Tamburini; Joshua J Carson; Jeffrey G Linger; Jessica K Tyler
Journal:  Genetics       Date:  2006-04-02       Impact factor: 4.562

10.  Histone H3K4 demethylation is negatively regulated by histone H3 acetylation in Saccharomyces cerevisiae.

Authors:  Vicki E Maltby; Benjamin J E Martin; Julie Brind'Amour; Adam T Chruscicki; Kristina L McBurney; Julia M Schulze; Ian J Johnson; Mark Hills; Thomas Hentrich; Michael S Kobor; Matthew C Lorincz; LeAnn J Howe
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-22       Impact factor: 11.205

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