Literature DB >> 20421872

Inducible gene expression: diverse regulatory mechanisms.

Vikki M Weake1, Jerry L Workman.   

Abstract

The rapid activation of gene expression in response to stimuli occurs largely through the regulation of RNA polymerase II-dependent transcription. In this Review, we discuss events that occur during the transcription cycle in eukaryotes that are important for the rapid and specific activation of gene expression in response to external stimuli. In addition to regulated recruitment of the transcription machinery to the promoter, it has now been shown that control steps can include chromatin remodelling and the release of paused polymerase. Recent work suggests that some components of signal transduction cascades also play an integral part in activating transcription at target genes.

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Year:  2010        PMID: 20421872     DOI: 10.1038/nrg2781

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  113 in total

1.  Recruitment of the SWI/SNF chromatin remodeling complex by transcriptional activators.

Authors:  N Yudkovsky; C Logie; S Hahn; C L Peterson
Journal:  Genes Dev       Date:  1999-09-15       Impact factor: 11.361

2.  SAGA is an essential in vivo target of the yeast acidic activator Gal4p.

Authors:  S R Bhaumik; M R Green
Journal:  Genes Dev       Date:  2001-08-01       Impact factor: 11.361

3.  Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS.

Authors:  Jung-Shin Lee; Abhijit Shukla; Jessica Schneider; Selene K Swanson; Michael P Washburn; Laurence Florens; Sukesh R Bhaumik; Ali Shilatifard
Journal:  Cell       Date:  2007-12-14       Impact factor: 41.582

4.  Sodium salicylate decreases intracellular ATP, induces both heat shock factor binding and chromosomal puffing, but does not induce hsp 70 gene transcription in Drosophila.

Authors:  N A Winegarden; K S Wong; M Sopta; J T Westwood
Journal:  J Biol Chem       Date:  1996-10-25       Impact factor: 5.157

5.  Gene activation by dissociation of an inhibitor from a transcriptional activation domain.

Authors:  Fenglei Jiang; Benjamin R Frey; Margery L Evans; Jordan C Friel; James E Hopper
Journal:  Mol Cell Biol       Date:  2009-08-03       Impact factor: 4.272

6.  Rad6-dependent ubiquitination of histone H2B in yeast.

Authors:  K Robzyk; J Recht; M A Osley
Journal:  Science       Date:  2000-01-21       Impact factor: 47.728

Review 7.  Yeast Gal4: a transcriptional paradigm revisited.

Authors:  Ana Traven; Branka Jelicic; Mary Sopta
Journal:  EMBO Rep       Date:  2006-05       Impact factor: 8.807

Review 8.  Mediator complexes and eukaryotic transcription regulation: an overview.

Authors:  Amelia Casamassimi; Claudio Napoli
Journal:  Biochimie       Date:  2007-08-11       Impact factor: 4.079

9.  An array of coactivators is required for optimal recruitment of TATA binding protein and RNA polymerase II by promoter-bound Gcn4p.

Authors:  Hongfang Qiu; Cuihua Hu; Sungpil Yoon; Krishnamurthy Natarajan; Mark J Swanson; Alan G Hinnebusch
Journal:  Mol Cell Biol       Date:  2004-05       Impact factor: 4.272

10.  The yeast galactose genetic switch is mediated by the formation of a Gal4p-Gal80p-Gal3p complex.

Authors:  A Platt; R J Reece
Journal:  EMBO J       Date:  1998-07-15       Impact factor: 11.598

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  167 in total

Review 1.  Transcriptional activators and activation mechanisms.

Authors:  Jun Ma
Journal:  Protein Cell       Date:  2011-12-17       Impact factor: 14.870

Review 2.  Controlling gene expression in response to stress.

Authors:  Eulàlia de Nadal; Gustav Ammerer; Francesc Posas
Journal:  Nat Rev Genet       Date:  2011-11-03       Impact factor: 53.242

3.  Remodelers organize cellular chromatin by counteracting intrinsic histone-DNA sequence preferences in a class-specific manner.

Authors:  Yuri M Moshkin; Gillian E Chalkley; Tsung Wai Kan; B Ashok Reddy; Zeliha Ozgur; Wilfred F J van Ijcken; Dick H W Dekkers; Jeroen A Demmers; Andrew A Travers; C Peter Verrijzer
Journal:  Mol Cell Biol       Date:  2011-11-28       Impact factor: 4.272

4.  Snf1/AMPK regulates Gcn5 occupancy, H3 acetylation and chromatin remodelling at S. cerevisiae ADY2 promoter.

Authors:  Georgia Abate; Emanuela Bastonini; Katherine A Braun; Loredana Verdone; Elton T Young; Micaela Caserta
Journal:  Biochim Biophys Acta       Date:  2012-01-28

5.  A role for intersubunit interactions in maintaining SAGA deubiquitinating module structure and activity.

Authors:  Nadine L Samara; Alison E Ringel; Cynthia Wolberger
Journal:  Structure       Date:  2012-07-05       Impact factor: 5.006

6.  eRNAs promote transcription by establishing chromatin accessibility at defined genomic loci.

Authors:  Kambiz Mousavi; Hossein Zare; Stefania Dell'orso; Lars Grontved; Gustavo Gutierrez-Cruz; Assia Derfoul; Gordon L Hager; Vittorio Sartorelli
Journal:  Mol Cell       Date:  2013-08-29       Impact factor: 17.970

Review 7.  Histidine-tag-directed chromophores for tracer analyses in the analytical ultracentrifuge.

Authors:  Lance M Hellman; Chunxia Zhao; Manana Melikishvili; Xiaorong Tao; James E Hopper; Sidney W Whiteheart; Michael G Fried
Journal:  Methods       Date:  2010-12-25       Impact factor: 3.608

Review 8.  An architectural genetic and epigenetic perspective.

Authors:  Gary S Stein; Janet L Stein; Andre J van Wijnen; Jane B Lian; Sayyed K Zaidi; Jeffrey A Nickerson; Martin A Montecino; Daniel W Young
Journal:  Integr Biol (Camb)       Date:  2010-12-24       Impact factor: 2.192

9.  Natural molecules induce and synergize to boost expression of the human antimicrobial peptide β-defensin-3.

Authors:  Emmanuel Sechet; Erica Telford; Clément Bonamy; Philippe J Sansonetti; Brice Sperandio
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-01       Impact factor: 11.205

10.  MED12 Regulates HSC-Specific Enhancers Independently of Mediator Kinase Activity to Control Hematopoiesis.

Authors:  Beatriz Aranda-Orgilles; Ricardo Saldaña-Meyer; Eric Wang; Eirini Trompouki; Anne Fassl; Stephanie Lau; Jasper Mullenders; Pedro P Rocha; Ramya Raviram; María Guillamot; María Sánchez-Díaz; Kun Wang; Clarisse Kayembe; Nan Zhang; Leonela Amoasii; Avik Choudhuri; Jane A Skok; Markus Schober; Danny Reinberg; Piotr Sicinski; Heinrich Schrewe; Aristotelis Tsirigos; Leonard I Zon; Iannis Aifantis
Journal:  Cell Stem Cell       Date:  2016-08-25       Impact factor: 24.633

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