Literature DB >> 20706221

Histone Sin mutations promote nucleosome traversal and histone displacement by RNA polymerase II.

Fu-Kai Hsieh1, Michael Fisher, Andrea Ujvári, Vasily M Studitsky, Donal S Luse.   

Abstract

Nucleosome traversal by RNA polymerase II (pol II) and recovery of chromatin structure after transcription are essential for proper gene expression. In this paper we show that nucleosomes assembled with Sin mutant histones present a much weaker barrier to traversal by pol II and are less likely to survive transcription. Increases in traversal from incorporation of Sin mutant histones and histones lacking H2A/H2B amino-terminal tails were in most cases additive, indicating that traversal can be facilitated by distinct mechanisms. We had identified a key intermediate in traversal, the zero (slashed circle)-loop, which mediates nucleosome survival during transcription. Sin mutations probably destabilize these intermediates and thus increase the likelihood of nucleosome disassociation.

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Year:  2010        PMID: 20706221      PMCID: PMC2933865          DOI: 10.1038/embor.2010.113

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  15 in total

1.  Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions.

Authors:  Uma M Muthurajan; Yunhe Bao; Lawrence J Forsberg; Rajeswari S Edayathumangalam; Pamela N Dyer; Cindy L White; Karolin Luger
Journal:  EMBO J       Date:  2004-01-22       Impact factor: 11.598

2.  Specific contributions of histone tails and their acetylation to the mechanical stability of nucleosomes.

Authors:  Brent Brower-Toland; David A Wacker; Robert M Fulbright; John T Lis; W Lee Kraus; Michelle D Wang
Journal:  J Mol Biol       Date:  2004-12-22       Impact factor: 5.469

3.  Replication-independent core histone dynamics at transcriptionally active loci in vivo.

Authors:  Christophe Thiriet; Jeffrey J Hayes
Journal:  Genes Dev       Date:  2005-03-15       Impact factor: 11.361

4.  New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning.

Authors:  P T Lowary; J Widom
Journal:  J Mol Biol       Date:  1998-02-13       Impact factor: 5.469

5.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

6.  Amino acid substitutions in the structured domains of histones H3 and H4 partially relieve the requirement of the yeast SWI/SNF complex for transcription.

Authors:  W Kruger; C L Peterson; A Sil; C Coburn; G Arents; E N Moudrianakis; I Herskowitz
Journal:  Genes Dev       Date:  1995-11-15       Impact factor: 11.361

7.  Evidence for nucleosome depletion at active regulatory regions genome-wide.

Authors:  Cheol-Koo Lee; Yoichiro Shibata; Bhargavi Rao; Brian D Strahl; Jason D Lieb
Journal:  Nat Genet       Date:  2004-07-11       Impact factor: 38.330

8.  Transcription elongation factors repress transcription initiation from cryptic sites.

Authors:  Craig D Kaplan; Lisa Laprade; Fred Winston
Journal:  Science       Date:  2003-08-22       Impact factor: 47.728

9.  Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II.

Authors:  Marc A Schwabish; Kevin Struhl
Journal:  Mol Cell Biol       Date:  2004-12       Impact factor: 4.272

10.  Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II.

Authors:  Olga I Kulaeva; Daria A Gaykalova; Nikolai A Pestov; Viktor V Golovastov; Dmitry G Vassylyev; Irina Artsimovitch; Vasily M Studitsky
Journal:  Nat Struct Mol Biol       Date:  2009-11-22       Impact factor: 15.369

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  28 in total

1.  Structural Analysis of the Key Intermediate Formed during Transcription through a Nucleosome.

Authors:  H-W Chang; A K Shaytan; F-K Hsieh; O I Kulaeva; M P Kirpichnikov; V M Studitsky
Journal:  Trends Cell Mol Biol       Date:  2013

2.  Efficient and rapid nucleosome traversal by RNA polymerase II depends on a combination of transcript elongation factors.

Authors:  Donal S Luse; Lisa C Spangler; Andrea Újvári
Journal:  J Biol Chem       Date:  2010-12-22       Impact factor: 5.157

3.  Structural analysis of nucleosomal barrier to transcription.

Authors:  Daria A Gaykalova; Olga I Kulaeva; Olesya Volokh; Alexey K Shaytan; Fu-Kai Hsieh; Mikhail P Kirpichnikov; Olga S Sokolova; Vasily M Studitsky
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-12       Impact factor: 11.205

4.  Experimental analysis of hFACT action during Pol II transcription in vitro.

Authors:  Fu-Kai Hsieh; Olga I Kulaeva; Vasily M Studitsky
Journal:  Methods Mol Biol       Date:  2015

5.  Scratching the (lateral) surface of chromatin regulation by histone modifications.

Authors:  Philipp Tropberger; Robert Schneider
Journal:  Nat Struct Mol Biol       Date:  2013-06-05       Impact factor: 15.369

Review 6.  Histone exchange and histone modifications during transcription and aging.

Authors:  Chandrima Das; Jessica K Tyler
Journal:  Biochim Biophys Acta       Date:  2013 Mar-Apr

7.  The mechanism of nucleosome traversal by RNA polymerase II: roles for template uncoiling and transcript elongation factors.

Authors:  Donal S Luse; Vasily M Studitsky
Journal:  RNA Biol       Date:  2011-07-01       Impact factor: 4.652

8.  Identification of histone mutants that are defective for transcription-coupled nucleosome occupancy.

Authors:  Sarah J Hainer; Joseph A Martens
Journal:  Mol Cell Biol       Date:  2011-07-05       Impact factor: 4.272

Review 9.  Molecular traffic jams on DNA.

Authors:  Ilya J Finkelstein; Eric C Greene
Journal:  Annu Rev Biophys       Date:  2013-02-28       Impact factor: 12.981

10.  Time-resolved analysis of transcription through chromatin.

Authors:  Han-Wen Chang; Fu-Kai Hsieh; Smita S Patel; Vasily M Studitsky
Journal:  Methods       Date:  2019-01-29       Impact factor: 3.608

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