Literature DB >> 11931764

The genome-wide localization of Rsc9, a component of the RSC chromatin-remodeling complex, changes in response to stress.

Marc Damelin1, Itamar Simon, Terence I Moy, Boris Wilson, Suzanne Komili, Paul Tempst, Frederick P Roth, Richard A Young, Bradley R Cairns, Pamela A Silver.   

Abstract

The cellular response to environmental changes includes widespread modifications in gene expression. Here we report the identification and characterization of Rsc9, a member of the RSC chromatin-remodeling complex in yeast. The genome-wide localization of Rsc9 indicated a relationship between genes targeted by Rsc9 and genes regulated by stress; treatment with hydrogen peroxide or rapamycin, which inhibits TOR signaling, resulted in genome-wide changes in Rsc9 occupancy. We further show that Rsc9 is involved in both repression and activation of mRNAs regulated by TOR as well as the synthesis of rRNA. Our results illustrate the response of a chromatin-remodeling factor to signaling cascades and suggest that changes in the activity of chromatin-remodeling factors are reflected in changes in their localization in the genome.

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Year:  2002        PMID: 11931764     DOI: 10.1016/s1097-2765(02)00475-6

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  78 in total

1.  Methylation of histone H3 Lys 4 in coding regions of active genes.

Authors:  Bradley E Bernstein; Emily L Humphrey; Rachel L Erlich; Robert Schneider; Peter Bouman; Jun S Liu; Tony Kouzarides; Stuart L Schreiber
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

2.  The nuclear actin-related proteins Arp7 and Arp9: a dimeric module that cooperates with architectural proteins for chromatin remodeling.

Authors:  Heather Szerlong; Anjanabha Saha; Bradley R Cairns
Journal:  EMBO J       Date:  2003-06-16       Impact factor: 11.598

3.  Coordinate regulation of multiple and distinct biosynthetic pathways by TOR and PKA kinases in S. cerevisiae.

Authors:  Jenny C-Y Chen; Ted Powers
Journal:  Curr Genet       Date:  2006-01-06       Impact factor: 3.886

4.  High-resolution DNA-binding specificity analysis of yeast transcription factors.

Authors:  Cong Zhu; Kelsey J R P Byers; Rachel Patton McCord; Zhenwei Shi; Michael F Berger; Daniel E Newburger; Katrina Saulrieta; Zachary Smith; Mita V Shah; Mathangi Radhakrishnan; Anthony A Philippakis; Yanhui Hu; Federico De Masi; Marcin Pacek; Andreas Rolfs; Tal Murthy; Joshua Labaer; Martha L Bulyk
Journal:  Genome Res       Date:  2009-01-21       Impact factor: 9.043

5.  DNA polymerase epsilon, acetylases and remodellers cooperate to form a specialized chromatin structure at a tRNA insulator.

Authors:  Namrita Dhillon; Jesse Raab; Julie Guzzo; Shawn J Szyjka; Sunil Gangadharan; Oscar M Aparicio; Brenda Andrews; Rohinton T Kamakaka
Journal:  EMBO J       Date:  2009-07-23       Impact factor: 11.598

6.  NuA4 lysine acetyltransferase Esa1 is targeted to coding regions and stimulates transcription elongation with Gcn5.

Authors:  Daniel S Ginsburg; Chhabi K Govind; Alan G Hinnebusch
Journal:  Mol Cell Biol       Date:  2009-10-12       Impact factor: 4.272

7.  Solution AFM studies of human Swi-Snf and its interactions with MMTV DNA and chromatin.

Authors:  H Wang; R Bash; S M Lindsay; D Lohr
Journal:  Biophys J       Date:  2005-08-12       Impact factor: 4.033

Review 8.  Transcriptional and Epigenetic Regulation by the Mechanistic Target of Rapamycin Complex 1 Pathway.

Authors:  R Nicholas Laribee
Journal:  J Mol Biol       Date:  2018-10-23       Impact factor: 5.469

Review 9.  How eukaryotic genes are transcribed.

Authors:  Bryan J Venters; B Franklin Pugh
Journal:  Crit Rev Biochem Mol Biol       Date:  2009-06       Impact factor: 8.250

10.  Evidence that Swi/Snf directly represses transcription in S. cerevisiae.

Authors:  Joseph A Martens; Fred Winston
Journal:  Genes Dev       Date:  2002-09-01       Impact factor: 11.361

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