Literature DB >> 15533052

Uncovering the basis for nonideal behavior of biological molecules.

Jörg Rösgen1, Bernard Montgomery Pettitt, David Wayne Bolen.   

Abstract

The molecular origin of the nonideal behavior for concentrated binary solutions of biochemical compounds is examined. The difference between activities expressed in the molar and molal conventions can be large. Considering the range from dilute to concentrated, we show that molar activity coefficients can be represented by simple but rigorous equations involving between one and three parameters only. We derive a universal relationship interconverting the scales of molarity and molality without requiring the density of the solution. The equations are developed from first principles using a statistical thermodynamic theory of molar activity coefficients. It is shown how to express activity coefficients in different concentration scales, and the advantages and disadvantages of using certain scales are discussed and compared with the experimental data. Several classes of biochemically relevant compounds, many of which are naturally occurring osmolytes, are discussed: six saccharides (glucose, xylose, maltose, mannose, raffinose, and sucrose), four polyols (glycerol, mannitol, erythritol, and sorbitol), five amino acids (glycine, alanine, sarcosine, glycine betaine, and proline), and urea. Of the 16 solutes, 10 could be described in terms of a single parameter that is due to pure first-order effects (packing, hydration, or space limitation). The remaining six exhibit significant second-order effects (solute-solute interactions) and require two additional parameters, one typically identified with the volume occupied per solute molecule in the pure solute (crystal or liquid) and the other with a self-association constant. The activity coefficients of the osmolytes roughly display the rank order found with respect to their ability to stabilize proteins. These findings are discussed in terms of the physical principles that give rise to the activity coefficients.

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Year:  2004        PMID: 15533052     DOI: 10.1021/bi048681o

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  20 in total

1.  Protein folding, stability, and solvation structure in osmolyte solutions.

Authors:  Jörg Rösgen; B Montgomery Pettitt; David Wayne Bolen
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

2.  The free energy of dissociation of oligomeric structure in phycocyanin is not linear with denaturant.

Authors:  Katie L Thoren; Katelyn B Connell; Taylor E Robinson; David D Shellhamer; Margaret S Tammaro; Yvonne M Gindt
Journal:  Biochemistry       Date:  2006-10-03       Impact factor: 3.162

3.  Protein phase diagrams II: nonideal behavior of biochemical reactions in the presence of osmolytes.

Authors:  Allan Chris M Ferreon; Josephine C Ferreon; D Wayne Bolen; Jörg Rösgen
Journal:  Biophys J       Date:  2006-10-06       Impact factor: 4.033

4.  An analysis of the molecular origin of osmolyte-dependent protein stability.

Authors:  Jörg Rösgen; B Montgomery Pettitt; David Wayne Bolen
Journal:  Protein Sci       Date:  2007-02-27       Impact factor: 6.725

5.  Quantitative assessments of the distinct contributions of polypeptide backbone amides versus side chain groups to chain expansion via chemical denaturation.

Authors:  Alex S Holehouse; Kanchan Garai; Nicholas Lyle; Andreas Vitalis; Rohit V Pappu
Journal:  J Am Chem Soc       Date:  2015-02-23       Impact factor: 15.419

Review 6.  Recent applications of Kirkwood-Buff theory to biological systems.

Authors:  Veronica Pierce; Myungshim Kang; Mahalaxmi Aburi; Samantha Weerasinghe; Paul E Smith
Journal:  Cell Biochem Biophys       Date:  2007-11-28       Impact factor: 2.194

7.  Preferential solvation in urea solutions at different concentrations: properties from simulation studies.

Authors:  Hironori Kokubo; B Montgomery Pettitt
Journal:  J Phys Chem B       Date:  2007-04-21       Impact factor: 2.991

8.  Molecular basis of the apparent near ideality of urea solutions.

Authors:  Hironori Kokubo; Jörg Rösgen; D Wayne Bolen; B Montgomery Pettitt
Journal:  Biophys J       Date:  2007-08-10       Impact factor: 4.033

9.  Distinctive solvation patterns make renal osmolytes diverse.

Authors:  Ruby Jackson-Atogi; Prem Kumar Sinha; Jörg Rösgen
Journal:  Biophys J       Date:  2013-11-05       Impact factor: 4.033

10.  Osmolyte solutions and protein folding.

Authors:  Char Y Hu; B Montgomery Pettitt; Joerg Roesgen
Journal:  F1000 Biol Rep       Date:  2009-05-28
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