Literature DB >> 24209862

Distinctive solvation patterns make renal osmolytes diverse.

Ruby Jackson-Atogi1, Prem Kumar Sinha, Jörg Rösgen.   

Abstract

The kidney uses mixtures of five osmolytes to counter the stress induced by high urea and NaCl concentrations. The individual roles of most of the osmolytes are unclear, and three of the five have not yet been thermodynamically characterized. Here, we report partial molar volumes and activity coefficients of glycerophosphocholine (GPC), taurine, and myo-inositol. We derive their solvation behavior from the experimental data using Kirkwood-Buff theory. We also provide their solubility data, including solubility data for scyllo-inositol. It turns out that renal osmolytes fall into three distinct classes with respect to their solvation. Trimethyl-amines (GPC and glycine-betaine) are characterized by strong hard-sphere-like self-exclusion; urea, taurine, and myo-inositol have a tendency toward self-association; sorbitol and most other nonrenal osmolytes have a relatively constant, intermediate solvation that has components of both exclusion and association. The data presented here show that renal osmolytes are quite diverse with respect to their solvation patterns, and they can be further differentiated based on observations from experiments examining their effect on macromolecules. It is expected, based on the available surface groups, that each renal osmolyte has distinct effects on various classes of biomolecules. This likely allows the kidney to use specific combinations of osmolytes independently to fine-tune the chemical activities of several types of molecules.
Copyright © 2013 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 24209862      PMCID: PMC3824553          DOI: 10.1016/j.bpj.2013.09.019

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  49 in total

Review 1.  Databases in protein crystallography.

Authors:  G J Kleywegt; T A Jones
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-11-01

2.  Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments.

Authors:  Seishi Shimizu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-19       Impact factor: 11.205

3.  PRODRG: a tool for high-throughput crystallography of protein-ligand complexes.

Authors:  Alexander W Schüttelkopf; Daan M F van Aalten
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-07-21

4.  Use of urea and glycine betaine to quantify coupled folding and probe the burial of DNA phosphates in lac repressor-lac operator binding.

Authors:  Jiang Hong; Mike W Capp; Ruth M Saecker; M Thomas Record
Journal:  Biochemistry       Date:  2005-12-27       Impact factor: 3.162

5.  The hydration structure of guanidinium and thiocyanate ions: implications for protein stability in aqueous solution.

Authors:  P E Mason; G W Neilson; C E Dempsey; A C Barnes; J M Cruickshank
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-08       Impact factor: 11.205

6.  Influence of dehydration on glycerophosphorylcholine and choline distribution along the rat nephron.

Authors:  O Levillain; M Schmolke; W G Guder
Journal:  Pflugers Arch       Date:  2001-05       Impact factor: 3.657

7.  Symmetry numbers for rigid, flexible, and fluxional molecules: theory and applications.

Authors:  Michael K Gilson; Karl K Irikura
Journal:  J Phys Chem B       Date:  2010-12-16       Impact factor: 2.991

8.  Vapor pressure osmometry studies of osmolyte-protein interactions: implications for the action of osmoprotectants in vivo and for the interpretation of "osmotic stress" experiments in vitro.

Authors:  E S Courtenay; M W Capp; C F Anderson; M T Record
Journal:  Biochemistry       Date:  2000-04-18       Impact factor: 3.162

9.  Survey of osmolytes in renal cell lines.

Authors:  T Nakanishi; R S Balaban; M B Burg
Journal:  Am J Physiol       Date:  1988-08

10.  Volume exclusion and H-bonding dominate the thermodynamics and solvation of trimethylamine-N-oxide in aqueous urea.

Authors:  Jörg Rösgen; Ruby Jackson-Atogi
Journal:  J Am Chem Soc       Date:  2012-02-10       Impact factor: 15.419

View more
  5 in total

1.  Dimethylglycine provides salt and temperature stress protection to Bacillus subtilis.

Authors:  Abdallah Bashir; Tamara Hoffmann; Sander H J Smits; Erhard Bremer
Journal:  Appl Environ Microbiol       Date:  2014-02-21       Impact factor: 4.792

2.  Taurine as a water structure breaker and protein stabilizer.

Authors:  P Bruździak; A Panuszko; E Kaczkowska; B Piotrowski; A Daghir; S Demkowicz; J Stangret
Journal:  Amino Acids       Date:  2017-10-17       Impact factor: 3.520

3.  Synergy in protein-osmolyte mixtures.

Authors:  Jörg Rösgen
Journal:  J Phys Chem B       Date:  2014-12-17       Impact factor: 2.991

Review 4.  Trimethylamine N-Oxide in Relation to Cardiometabolic Health-Cause or Effect?

Authors:  Christopher Papandreou; Margret Moré; Aouatef Bellamine
Journal:  Nutrients       Date:  2020-05-07       Impact factor: 5.717

5.  Conformational Consequences for Compatible Osmolytes on Thermal Denaturation.

Authors:  Nimesh Shukla; Brianna Bembenek; Erika A Taylor; Christina M Othon
Journal:  Life (Basel)       Date:  2021-12-13
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.