Literature DB >> 15527383

The Kirkwood-Buff theory and the effect of cosolvents on biochemical reactions.

Seishi Shimizu1, Chandra L Boon.   

Abstract

Cosolvents added to aqueous solutions of biomolecules profoundly affect protein stability, as well as biochemical equilibria. Some cosolvents, such as urea and guanidine hydrochloride, denature proteins, whereas others, such as osmolytes and crowders, stabilize the native structures of proteins. The way cosolvents interact with biomolecules is crucial information required to understand the cosolvent effect at a molecular level. We present a statistical mechanical framework based upon Kirkwood-Buff theory, which enables one to extract this picture from experimental data. The combination of two experimental results, namely, the cosolvent-induced equilibrium shift and the partial molar volume change upon the reaction, supplimented by the structural change, is shown to yield the number of water and cosolvent molecules bound or released during a reaction. Previously, denaturation experiments (e.g., m-value analysis) were analyzed by empirical and stoichiometric solvent-binding models, while the effects of osmolytes and crowders were analyzed by the approximate molecular crowding approach for low cosolvent concentration. Here we synthesize these previous approaches in a rigorous statistical mechanical treatment, which is applicable at any cosolvent concentration. The usefulness and accuracy of previous approaches was also evaluated. Copyright 2004 American Institute of Physics.

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Year:  2004        PMID: 15527383     DOI: 10.1063/1.1806402

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  21 in total

1.  Sodium perchlorate effects on the helical stability of a mainly alanine peptide.

Authors:  Eliana K Asciutto; Ignacio J General; Kan Xiong; Kang Xiong; Sanford A Asher; Jeffry D Madura
Journal:  Biophys J       Date:  2010-01-20       Impact factor: 4.033

2.  A protein molecule in a mixed solvent: the preferential binding parameter via the Kirkwood-Buff theory.

Authors:  Ivan L Shulgin; Eli Ruckenstein
Journal:  Biophys J       Date:  2005-11-04       Impact factor: 4.033

3.  Protein folding, stability, and solvation structure in osmolyte solutions.

Authors:  Jörg Rösgen; B Montgomery Pettitt; David Wayne Bolen
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

4.  Cation binding linked to a sequence-specific CAP-DNA interaction.

Authors:  Douglas F Stickle; Michael G Fried
Journal:  Biophys Chem       Date:  2006-06-19       Impact factor: 2.352

5.  Chemical potential derivatives and preferential interaction parameters in biological systems from Kirkwood-Buff theory.

Authors:  Paul E Smith
Journal:  Biophys J       Date:  2006-05-05       Impact factor: 4.033

6.  An analysis of the molecular origin of osmolyte-dependent protein stability.

Authors:  Jörg Rösgen; B Montgomery Pettitt; David Wayne Bolen
Journal:  Protein Sci       Date:  2007-02-27       Impact factor: 6.725

Review 7.  Recent applications of Kirkwood-Buff theory to biological systems.

Authors:  Veronica Pierce; Myungshim Kang; Mahalaxmi Aburi; Samantha Weerasinghe; Paul E Smith
Journal:  Cell Biochem Biophys       Date:  2007-11-28       Impact factor: 2.194

8.  Kirkwood-Buff theory of four and higher component mixtures.

Authors:  Myungshim Kang; Paul E Smith
Journal:  J Chem Phys       Date:  2008-06-28       Impact factor: 3.488

9.  Kirkwood-Buff theory of molecular and protein association, aggregation, and cellular crowding.

Authors:  Moon Bae Gee; Paul E Smith
Journal:  J Chem Phys       Date:  2009-10-28       Impact factor: 3.488

10.  Fluctuation theory of molecular association and conformational equilibria.

Authors:  Yuanfang Jiao; Paul E Smith
Journal:  J Chem Phys       Date:  2011-07-07       Impact factor: 3.488

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