Literature DB >> 16679363

Chemical potential derivatives and preferential interaction parameters in biological systems from Kirkwood-Buff theory.

Paul E Smith1.   

Abstract

New expressions for chemical potential derivatives and preferential interaction parameters for ternary mixtures are derived for open, semiopen, and closed ensembles in terms of Kirkwood-Buff integrals, where all three components are present at finite concentrations. This is achieved using a simple approach that avoids the use of the general matrix formulation of Kirkwood-Buff theory. The resulting expressions provide a rigorous foundation for the analysis of experimental and simulation data. Using the results, a simple model is developed and used to investigate the possible effects of finite protein concentrations on the corresponding cosolvent dependent chemical potential and denaturation thermodynamics.

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Year:  2006        PMID: 16679363      PMCID: PMC1563761          DOI: 10.1529/biophysj.105.078790

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  21 in total

1.  Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives.

Authors:  V A Parsegian; R P Rand; D C Rau
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

2.  Assessing accumulated solvent near a macromolecular solute by preferential interaction coefficients.

Authors:  Karen E S Tang; Victor A Bloomfield
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

3.  Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments.

Authors:  Seishi Shimizu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-19       Impact factor: 11.205

4.  Estimation of excess solvation numbers of water and cosolvents from preferential interaction and volumetric experiments.

Authors:  Seishi Shimizu
Journal:  J Chem Phys       Date:  2004-03-08       Impact factor: 3.488

5.  The Kirkwood-Buff theory and the effect of cosolvents on biochemical reactions.

Authors:  Seishi Shimizu; Chandra L Boon
Journal:  J Chem Phys       Date:  2004-11-08       Impact factor: 3.488

6.  A protein molecule in a mixed solvent: the preferential binding parameter via the Kirkwood-Buff theory.

Authors:  Ivan L Shulgin; Eli Ruckenstein
Journal:  Biophys J       Date:  2005-11-04       Impact factor: 4.033

7.  Theoretical study of volume changes associated with the helix-coil transition of an alanine-rich peptide in aqueous solution.

Authors:  Takashi Imai; Takahiro Takekiyo; Andriy Kovalenko; Fumio Hirata; Minoru Kato; Yoshihiro Taniguchi
Journal:  Biopolymers       Date:  2005-10-05       Impact factor: 2.505

8.  A contribution to the theory of preferential interaction coefficients.

Authors:  J Michael Schurr; David P Rangel; Sergio R Aragon
Journal:  Biophys J       Date:  2005-07-29       Impact factor: 4.033

9.  Theory of preferential solvation of nonelectrolytes.

Authors:  A Ben-Naim
Journal:  Cell Biophys       Date:  1988 Jan-Jun

10.  Thermodynamics of the denaturation of lysozyme by guanidine hydrochloride. II. Dependence on denaturant concentration at 25 degrees.

Authors:  K C Aune; C Tanford
Journal:  Biochemistry       Date:  1969-11       Impact factor: 3.162

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  26 in total

1.  Kirkwood-Buff integrals for ideal solutions.

Authors:  Elizabeth A Ploetz; Nikolaos Bentenitis; Paul E Smith
Journal:  J Chem Phys       Date:  2010-04-28       Impact factor: 3.488

2.  Local Fluctuations in Solution: Theory and Applications.

Authors:  Elizabeth A Ploetz; Paul E Smith
Journal:  Adv Chem Phys       Date:  2013       Impact factor: 1.000

3.  Hydration changes accompanying the binding of minor groove ligands with DNA.

Authors:  Natalya N Degtyareva; Bret D Wallace; Andrea R Bryant; Kristine M Loo; Jeffrey T Petty
Journal:  Biophys J       Date:  2006-11-17       Impact factor: 4.033

4.  An analysis of the molecular origin of osmolyte-dependent protein stability.

Authors:  Jörg Rösgen; B Montgomery Pettitt; David Wayne Bolen
Journal:  Protein Sci       Date:  2007-02-27       Impact factor: 6.725

Review 5.  Recent applications of Kirkwood-Buff theory to biological systems.

Authors:  Veronica Pierce; Myungshim Kang; Mahalaxmi Aburi; Samantha Weerasinghe; Paul E Smith
Journal:  Cell Biochem Biophys       Date:  2007-11-28       Impact factor: 2.194

6.  Kirkwood-Buff theory of four and higher component mixtures.

Authors:  Myungshim Kang; Paul E Smith
Journal:  J Chem Phys       Date:  2008-06-28       Impact factor: 3.488

7.  On the theory of solute solubility in mixed solvents.

Authors:  Paul E Smith; Robert M Mazo
Journal:  J Phys Chem B       Date:  2008-06-05       Impact factor: 2.991

8.  SANS/SAXS study of the BSA solvation properties in aqueous urea solutions via a global fit approach.

Authors:  Raffaele Sinibaldi; Maria Grazia Ortore; Francesco Spinozzi; Sérgio de Souza Funari; José Teixeira; Paolo Mariani
Journal:  Eur Biophys J       Date:  2008-03-26       Impact factor: 1.733

9.  Theory and Simulation of Multicomponent Osmotic Systems.

Authors:  Sadish Karunaweera; Moon Bae Gee; Samantha Weerasinghe; Paul E Smith
Journal:  J Chem Theory Comput       Date:  2012-10-09       Impact factor: 6.006

10.  Thermodynamic and structural basis for relaxation of specificity in protein-DNA recognition.

Authors:  Paul J Sapienza; Tianyi Niu; Michael R Kurpiewski; Arabela Grigorescu; Linda Jen-Jacobson
Journal:  J Mol Biol       Date:  2013-09-14       Impact factor: 5.469

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