Literature DB >> 27224484

SAXS/SANS on Supercharged Proteins Reveals Residue-Specific Modifications of the Hydration Shell.

Henry S Kim1, Anne Martel2, Eric Girard1, Martine Moulin2, Michael Härtlein2, Dominique Madern3, Martin Blackledge1, Bruno Franzetti3, Frank Gabel4.   

Abstract

Water molecules in the immediate vicinity of biomacromolecules, including proteins, constitute a hydration layer characterized by physicochemical properties different from those of bulk water and play a vital role in the activity and stability of these structures, as well as in intermolecular interactions. Previous studies using solution scattering, crystallography, and molecular dynamics simulations have provided valuable information about the properties of these hydration shells, including modifications in density and ionic concentration. Small-angle scattering of x-rays (SAXS) and neutrons (SANS) are particularly useful and complementary techniques to study biomacromolecular hydration shells due to their sensitivity to electronic and nuclear scattering-length density fluctuations, respectively. Although several sophisticated SAXS/SANS programs have been developed recently, the impact of physicochemical surface properties on the hydration layer remains controversial, and systematic experimental data from individual biomacromolecular systems are scarce. Here, we address the impact of physicochemical surface properties on the hydration shell by a systematic SAXS/SANS study using three mutants of a single protein, green fluorescent protein (GFP), with highly variable net charge (+36, -6, and -29). The combined analysis of our data shows that the hydration shell is locally denser in the vicinity of acidic surface residues, whereas basic and hydrophilic/hydrophobic residues only mildly modify its density. Moreover, the data demonstrate that the density modifications result from the combined effect of residue-specific recruitment of ions from the bulk in combination with water structural rearrangements in their vicinity. Finally, we find that the specific surface-charge distributions of the different GFP mutants modulate the conformational space of flexible parts of the protein.
Copyright © 2016 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27224484      PMCID: PMC4880798          DOI: 10.1016/j.bpj.2016.04.013

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  72 in total

1.  Is the first hydration shell of lysozyme of higher density than bulk water?

Authors:  Franci Merzel; Jeremy C Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

2.  Modeling the hydration layer around proteins: applications to small- and wide-angle x-ray scattering.

Authors:  Jouko Juhani Virtanen; Lee Makowski; Tobin R Sosnick; Karl F Freed
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

3.  High-density hydration layer of lysozymes: molecular dynamics decomposition of solution scattering data.

Authors:  Franci Merzel; Jeremy C Smith
Journal:  J Chem Inf Model       Date:  2005 Nov-Dec       Impact factor: 4.956

4.  Quantification and rationalization of the higher affinity of sodium over potassium to protein surfaces.

Authors:  Lubos Vrbka; Jirí Vondrásek; Barbara Jagoda-Cwiklik; Robert Vácha; Pavel Jungwirth
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-10       Impact factor: 11.205

5.  Supercharging proteins can impart unusual resilience.

Authors:  Michael S Lawrence; Kevin J Phillips; David R Liu
Journal:  J Am Chem Soc       Date:  2007-08-01       Impact factor: 15.419

6.  Structural characterization of flexible proteins using small-angle X-ray scattering.

Authors:  Pau Bernadó; Efstratios Mylonas; Maxim V Petoukhov; Martin Blackledge; Dmitri I Svergun
Journal:  J Am Chem Soc       Date:  2007-04-06       Impact factor: 15.419

Review 7.  SAXS studies of ion-nucleic acid interactions.

Authors:  Lois Pollack
Journal:  Annu Rev Biophys       Date:  2011       Impact factor: 12.981

8.  Solvent interactions of halophilic malate dehydrogenase.

Authors:  Christine Ebel; Lionel Costenaro; Mihaela Pascu; Pierre Faou; Blandine Kernel; Flavien Proust-De Martin; Giuseppe Zaccai
Journal:  Biochemistry       Date:  2002-11-05       Impact factor: 3.162

9.  FoXS: a web server for rapid computation and fitting of SAXS profiles.

Authors:  Dina Schneidman-Duhovny; Michal Hammel; Andrej Sali
Journal:  Nucleic Acids Res       Date:  2010-05-27       Impact factor: 16.971

10.  Protein hydration dynamics in aqueous solution: a comparison of bovine pancreatic trypsin inhibitor and ubiquitin by oxygen-17 spin relaxation dispersion.

Authors:  V P Denisov; B Halle
Journal:  J Mol Biol       Date:  1995-02-03       Impact factor: 5.469

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  7 in total

1.  Examining Membrane Proteins by Neutron Scattering.

Authors:  Christine Ebel; Cécile Breyton; Anne Martel
Journal:  Methods Mol Biol       Date:  2020

2.  Disentangling polydispersity in the PCNA-p15PAF complex, a disordered, transient and multivalent macromolecular assembly.

Authors:  Tiago N Cordeiro; Po-Chia Chen; Alfredo De Biasio; Nathalie Sibille; Francisco J Blanco; Jochen S Hub; Ramon Crehuet; Pau Bernadó
Journal:  Nucleic Acids Res       Date:  2017-02-17       Impact factor: 16.971

3.  Structural Information on Bacterial Amyloid and Amyloid-DNA Complex Obtained by Small-Angle Neutron or X-Ray Scattering.

Authors:  Tatsuhito Matsuo; Véronique Arluison; Frank Wien; Judith Peters
Journal:  Methods Mol Biol       Date:  2022

Review 4.  What macromolecular crystallogenesis tells us - what is needed in the future.

Authors:  Richard Giegé
Journal:  IUCrJ       Date:  2017-05-24       Impact factor: 4.769

5.  Observing Protein Degradation by the PAN-20S Proteasome by Time-Resolved Neutron Scattering.

Authors:  Emilie Mahieu; Jacques Covès; Georg Krüger; Anne Martel; Martine Moulin; Nico Carl; Michael Härtlein; Teresa Carlomagno; Bruno Franzetti; Frank Gabel
Journal:  Biophys J       Date:  2020-06-24       Impact factor: 4.033

6.  Impact of Arginine-Phosphate Interactions on the Reentrant Condensation of Disordered Proteins.

Authors:  Samuel Lenton; Stefan Hervø-Hansen; Anton M Popov; Mark D Tully; Mikael Lund; Marie Skepö
Journal:  Biomacromolecules       Date:  2021-03-17       Impact factor: 6.988

7.  Molecular Dynamics of Lysozyme Amyloid Polymorphs Studied by Incoherent Neutron Scattering.

Authors:  Tatsuhito Matsuo; Alessio De Francesco; Judith Peters
Journal:  Front Mol Biosci       Date:  2022-01-17
  7 in total

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