Literature DB >> 15041643

Metastable network model of protein transport through nuclear pores.

T Kustanovich1, Y Rabin.   

Abstract

To reconcile the observed selectivity and the high rate of translocation of cargo-importin complexes through nuclear pores, we propose that the core of the nuclear pore complex is blocked by a metastable network of phenylalanine and glycine nucleoporins. Although the network arrests the unfacilitated passage of objects larger than its mesh size, cargo-importin complexes act as catalysts that reduce the free energy barrier between the cross-linked and the dissociated states of the Nups, and open the network. Using Brownian dynamics simulations we calculate the distribution of passage times through the network for inert particles and cargo-importin complexes of different sizes and discuss the implications of our results for experiments on translocation of proteins through the nuclear pore complex.

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Year:  2004        PMID: 15041643      PMCID: PMC1304054          DOI: 10.1016/S0006-3495(04)74262-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  24 in total

1.  Kinetic analysis of translocation through nuclear pore complexes.

Authors:  K Ribbeck; D Görlich
Journal:  EMBO J       Date:  2001-03-15       Impact factor: 11.598

Review 2.  Transport into and out of the nucleus.

Authors:  I G Macara
Journal:  Microbiol Mol Biol Rev       Date:  2001-12       Impact factor: 11.056

3.  Kinetics and mechanism of DNA uptake into the cell nucleus.

Authors:  H Salman; D Zbaida; Y Rabin; D Chatenay; M Elbaum
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-05       Impact factor: 11.205

4.  The permeability barrier of nuclear pore complexes appears to operate via hydrophobic exclusion.

Authors:  Katharina Ribbeck; Dirk Görlich
Journal:  EMBO J       Date:  2002-06-03       Impact factor: 11.598

5.  The nuclear pore complex mystery and anomalous diffusion in reversible gels.

Authors:  Thomas Bickel; Robijn Bruinsma
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

6.  Molecular dynamics simulation for polymers in the presence of a heat bath.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1986-05

7.  Permeability of single nuclear pores.

Authors:  O Keminer; R Peters
Journal:  Biophys J       Date:  1999-07       Impact factor: 4.033

8.  Disorder in the nuclear pore complex: the FG repeat regions of nucleoporins are natively unfolded.

Authors:  Daniel P Denning; Samir S Patel; Vladimir Uversky; Anthony L Fink; Michael Rexach
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-25       Impact factor: 11.205

9.  Receptor-mediated substrate translocation through the nuclear pore complex without nucleotide triphosphate hydrolysis.

Authors:  L Englmeier; J C Olivo; I W Mattaj
Journal:  Curr Biol       Date:  1999-01-14       Impact factor: 10.834

10.  Protein import into nuclei: association and dissociation reactions involving transport substrate, transport factors, and nucleoporins.

Authors:  M Rexach; G Blobel
Journal:  Cell       Date:  1995-12-01       Impact factor: 41.582

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  21 in total

1.  Imaging of single-molecule translocation through nuclear pore complexes.

Authors:  Weidong Yang; Jeff Gelles; Siegfried M Musser
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-11       Impact factor: 11.205

2.  Dynamics of single mRNP nucleocytoplasmic transport and export through the nuclear pore in living cells.

Authors:  Amir Mor; Shimrit Suliman; Rakefet Ben-Yishay; Sharon Yunger; Yehuda Brody; Yaron Shav-Tal
Journal:  Nat Cell Biol       Date:  2010-05-09       Impact factor: 28.824

3.  A bimodal distribution of two distinct categories of intrinsically disordered structures with separate functions in FG nucleoporins.

Authors:  Justin Yamada; Joshua L Phillips; Samir Patel; Gabriel Goldfien; Alison Calestagne-Morelli; Hans Huang; Ryan Reza; Justin Acheson; Viswanathan V Krishnan; Shawn Newsam; Ajay Gopinathan; Edmond Y Lau; Michael E Colvin; Vladimir N Uversky; Michael F Rexach
Journal:  Mol Cell Proteomics       Date:  2010-04-05       Impact factor: 5.911

Review 4.  Dynamics of transcription and mRNA export.

Authors:  Xavier Darzacq; Robert H Singer; Yaron Shav-Tal
Journal:  Curr Opin Cell Biol       Date:  2005-06       Impact factor: 8.382

5.  From the trap to the basket: getting to the bottom of the nuclear pore complex.

Authors:  Roderick Y H Lim; Ueli Aebi; Daniel Stoffler
Journal:  Chromosoma       Date:  2006-01-10       Impact factor: 4.316

Review 6.  Biology and biophysics of the nuclear pore complex and its components.

Authors:  Roderick Y H Lim; Katharine S Ullman; Birthe Fahrenkrog
Journal:  Int Rev Cell Mol Biol       Date:  2008       Impact factor: 6.813

7.  Managing free-energy barriers in nuclear pore transport.

Authors:  Brian Nielsen; Claus Jeppesen; John H Ipsen
Journal:  J Biol Phys       Date:  2006-12-19       Impact factor: 1.365

8.  Nucleocytoplasmic transport: a thermodynamic mechanism.

Authors:  Ronen Benjamine Kopito; Michael Elbaum
Journal:  HFSP J       Date:  2009-03-18

9.  Effects of jamming on nonequilibrium transport times in nanochannels.

Authors:  A Zilman; J Pearson; G Bel
Journal:  Phys Rev Lett       Date:  2009-09-17       Impact factor: 9.161

10.  Simulations of nuclear pore transport yield mechanistic insights and quantitative predictions.

Authors:  Joshua S Mincer; Sanford M Simon
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-20       Impact factor: 11.205

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