Literature DB >> 19669451

Managing free-energy barriers in nuclear pore transport.

Brian Nielsen1, Claus Jeppesen, John H Ipsen.   

Abstract

The Nuclear Pore Complexes (NPC) facilitate highly selective gateways for transport of macromolecules across the Nuclear Envelope (NE). Based on the current accumulated knowledge of the architecture of NPC we have established a minimal physical model of the pore and the transport mechanism. The barrier properties of the NPC model are analyzed by the recently established Wang-Landau Monte Carlo computer simulation technique and the transport properties are extracted by employing Kramers' theory of reaction rates. We show that our physical model can account for a range of characteristics observed for nuclear pore transport.

Year:  2006        PMID: 19669451      PMCID: PMC2651533          DOI: 10.1007/s10867-006-9029-5

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  23 in total

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Journal:  Annu Rev Cell Dev Biol       Date:  1999       Impact factor: 13.827

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Authors:  D Goldfarb; N Michaud
Journal:  Trends Cell Biol       Date:  1991-07       Impact factor: 20.808

3.  Structural basis for Nup2p function in cargo release and karyopherin recycling in nuclear import.

Authors:  Yoshiyuki Matsuura; Allison Lange; Michelle T Harreman; Anita H Corbett; Murray Stewart
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5.  Imaging of single-molecule translocation through nuclear pore complexes.

Authors:  Weidong Yang; Jeff Gelles; Siegfried M Musser
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-11       Impact factor: 11.205

6.  New Monte Carlo algorithm: Entropic sampling.

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Journal:  Phys Rev Lett       Date:  1993-07-12       Impact factor: 9.161

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Authors:  A C Rowat; L J Foster; M M Nielsen; M Weiss; J H Ipsen
Journal:  J R Soc Interface       Date:  2005-03-22       Impact factor: 4.118

8.  Disorder in the nuclear pore complex: the FG repeat regions of nucleoporins are natively unfolded.

Authors:  Daniel P Denning; Samir S Patel; Vladimir Uversky; Anthony L Fink; Michael Rexach
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-25       Impact factor: 11.205

9.  Nuclear transport of single molecules: dwell times at the nuclear pore complex.

Authors:  Ulrich Kubitscheck; David Grünwald; Andreas Hoekstra; Daniel Rohleder; Thorsten Kues; Jan Peter Siebrasse; Reiner Peters
Journal:  J Cell Biol       Date:  2005-01-17       Impact factor: 10.539

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Authors:  C M Feldherr; D Akin
Journal:  J Cell Sci       Date:  1997-12       Impact factor: 5.285

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  3 in total

Review 1.  Biology and biophysics of the nuclear pore complex and its components.

Authors:  Roderick Y H Lim; Katharine S Ullman; Birthe Fahrenkrog
Journal:  Int Rev Cell Mol Biol       Date:  2008       Impact factor: 6.813

2.  The first-passage problem for diffusion through a cylindrical pore with sticky walls.

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Journal:  Eur Phys J E Soft Matter       Date:  2009-10-24       Impact factor: 1.890

3.  The tension of framed membranes from computer simulations.

Authors:  Daniel Hamkens; Claus Jeppesen; John H Ipsen
Journal:  Eur Phys J E Soft Matter       Date:  2018-03-28       Impact factor: 1.890

  3 in total

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