Literature DB >> 15901505

Dynamics of transcription and mRNA export.

Xavier Darzacq1, Robert H Singer, Yaron Shav-Tal.   

Abstract

Understanding the different molecular mechanisms responsible for gene expression has been a central interest of molecular biologists for several decades. Transcription, the initial step of gene expression, consists of converting the genetic code into a dynamic messenger RNA that will specify a required cellular function following translocation to the cytoplasm and translation. We now possess an in-depth understanding of the mechanism and regulations of transcription. By contrast, an understanding of the dynamics of an individual gene's expression in real time is just beginning to emerge following recent technological developments.

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Year:  2005        PMID: 15901505      PMCID: PMC4943869          DOI: 10.1016/j.ceb.2005.04.004

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  69 in total

1.  Genome-wide location and function of DNA binding proteins.

Authors:  B Ren; F Robert; J J Wyrick; O Aparicio; E G Jennings; I Simon; J Zeitlinger; J Schreiber; N Hannett; E Kanin; T L Volkert; C J Wilson; S P Bell; R A Young
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

2.  The glucocorticoid receptor: rapid exchange with regulatory sites in living cells.

Authors:  J G McNally; W G Müller; D Walker; R Wolford; G L Hager
Journal:  Science       Date:  2000-02-18       Impact factor: 47.728

Review 3.  Kinetic modelling approaches to in vivo imaging.

Authors:  R D Phair; T Misteli
Journal:  Nat Rev Mol Cell Biol       Date:  2001-12       Impact factor: 94.444

4.  Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development.

Authors:  Steven T Kosak; Jane A Skok; Kay L Medina; Roy Riblet; Michelle M Le Beau; Amanda G Fisher; Harinder Singh
Journal:  Science       Date:  2002-04-05       Impact factor: 47.728

Review 5.  Gene expression and the myth of the average cell.

Authors:  Jeffrey M Levsky; Robert H Singer
Journal:  Trends Cell Biol       Date:  2003-01       Impact factor: 20.808

6.  Nuclear RNAs confined to a reticular compartment between chromosome territories.

Authors:  Joanna M Bridger; Claudia Kalla; Harald Wodrich; Sandra Weitz; Jason A King; Khashayarsha Khazaie; Hans-Georg Kräusslich; Peter Lichter
Journal:  Exp Cell Res       Date:  2005-01-15       Impact factor: 3.905

7.  Progression of the cell cycle through mitosis leads to abortion of nascent transcripts.

Authors:  A W Shermoen; P H O'Farrell
Journal:  Cell       Date:  1991-10-18       Impact factor: 41.582

8.  The human dystrophin gene requires 16 hours to be transcribed and is cotranscriptionally spliced.

Authors:  C N Tennyson; H J Klamut; R G Worton
Journal:  Nat Genet       Date:  1995-02       Impact factor: 38.330

9.  Rapid changes in Drosophila transcription after an instantaneous heat shock.

Authors:  T O'Brien; J T Lis
Journal:  Mol Cell Biol       Date:  1993-06       Impact factor: 4.272

10.  Rapid glucocorticoid receptor exchange at a promoter is coupled to transcription and regulated by chaperones and proteasomes.

Authors:  Diana A Stavreva; Waltraud G Müller; Gordon L Hager; Carolyn L Smith; James G McNally
Journal:  Mol Cell Biol       Date:  2004-04       Impact factor: 4.272

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  22 in total

1.  Transcription and splicing: when the twain meet.

Authors:  Yehuda Brody; Yaron Shav-Tal
Journal:  Transcription       Date:  2011 Sep-Oct

2.  Single-allele analysis of transcription kinetics in living mammalian cells.

Authors:  Sharon Yunger; Liat Rosenfeld; Yuval Garini; Yaron Shav-Tal
Journal:  Nat Methods       Date:  2010-07-18       Impact factor: 28.547

Review 3.  Gene expression within a dynamic nuclear landscape.

Authors:  Yaron Shav-Tal; Xavier Darzacq; Robert H Singer
Journal:  EMBO J       Date:  2006-07-13       Impact factor: 11.598

4.  Intranuclear binding kinetics and mobility of single native U1 snRNP particles in living cells.

Authors:  David Grünwald; Beatrice Spottke; Volker Buschmann; Ulrich Kubitscheck
Journal:  Mol Biol Cell       Date:  2006-09-20       Impact factor: 4.138

5.  In vivo dynamics of RNA polymerase II transcription.

Authors:  Xavier Darzacq; Yaron Shav-Tal; Valeria de Turris; Yehuda Brody; Shailesh M Shenoy; Robert D Phair; Robert H Singer
Journal:  Nat Struct Mol Biol       Date:  2007-08-05       Impact factor: 15.369

6.  The dynamic range of transcription.

Authors:  Xavier Darzacq; Robert H Singer
Journal:  Mol Cell       Date:  2008-06-06       Impact factor: 17.970

Review 7.  Zooming in on single active genes in living mammalian cells.

Authors:  Sharon Yunger; Alon Kalo; Pinhas Kafri; Jonathan Sheinberger; Erez Lavi; Noa Neufeld; Yaron Shav-Tal
Journal:  Histochem Cell Biol       Date:  2013-06-09       Impact factor: 4.304

8.  Visualizing nuclear RNAi activity in single living human cells.

Authors:  Shira Avivi; Amir Mor; Iris Dotan; Sivan Tzadok; Itamar Kanter; Noa Kinor; Dan Canaani; Yaron Shav-Tal
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-03       Impact factor: 11.205

9.  GANP enhances the efficiency of mRNA nuclear export in mammalian cells.

Authors:  Vihandha O Wickramasinghe; Murray Stewart; Ronald A Laskey
Journal:  Nucleus       Date:  2010 Sep-Oct       Impact factor: 4.197

10.  Electrophysiological studies in Xenopus oocytes for the opening of Escherichia coli SecA-dependent protein-conducting channels.

Authors:  Bor-Ruei Lin; Lila M Gierasch; Chun Jiang; Phang C Tai
Journal:  J Membr Biol       Date:  2007-05-25       Impact factor: 1.843

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