Literature DB >> 19792464

Effects of jamming on nonequilibrium transport times in nanochannels.

A Zilman1, J Pearson, G Bel.   

Abstract

Many biological channels perform highly selective transport without direct input of metabolic energy and without transitions from a "closed" to an "open" state during transport. Mechanisms of selectivity of such channels serve as an inspiration for creation of artificial nanomolecular sorting devices and biosensors. To elucidate the transport mechanisms, it is important to understand the transport on the single molecule level in the experimentally relevant regime when multiple particles are crowded in the channel. In this Letter we analyze the effects of interparticle crowding on the nonequilibrium transport times through a finite-length channel by means of analytical theory and computer simulations.

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Year:  2009        PMID: 19792464      PMCID: PMC3604790          DOI: 10.1103/PhysRevLett.103.128103

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  31 in total

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2.  Imaging of single-molecule translocation through nuclear pore complexes.

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3.  First passage and cooperativity of queuing kinetics.

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Review 4.  Dynamic nuclear pore complexes: life on the edge.

Authors:  Elizabeth J Tran; Susan R Wente
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5.  Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited.

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Journal:  Nat Chem Biol       Date:  2005-12-25       Impact factor: 15.040

6.  Diffusion model of solute dynamics in a membrane channel: mapping onto the two-site model and optimizing the flux.

Authors:  Sergey M Bezrukov; Alexander M Berezhkovskii; Attila Szabo
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7.  Synthetic mimic of selective transport through the nuclear pore complex.

Authors:  Yaron Caspi; David Zbaida; Hagai Cohen; Michael Elbaum
Journal:  Nano Lett       Date:  2008-10-25       Impact factor: 11.189

8.  Blocking anthrax lethal toxin at the protective antigen channel by using structure-inspired drug design.

Authors:  Vladimir A Karginov; Ekaterina M Nestorovich; Mahtab Moayeri; Stephen H Leppla; Sergey M Bezrukov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-07       Impact factor: 11.205

9.  Artificial nanopores that mimic the transport selectivity of the nuclear pore complex.

Authors:  Tijana Jovanovic-Talisman; Jaclyn Tetenbaum-Novatt; Anna Sophia McKenney; Anton Zilman; Reiner Peters; Michael P Rout; Brian T Chait
Journal:  Nature       Date:  2008-12-21       Impact factor: 49.962

10.  Probing intranuclear environments at the single-molecule level.

Authors:  David Grünwald; Robert M Martin; Volker Buschmann; David P Bazett-Jones; Heinrich Leonhardt; Ulrich Kubitscheck; M Cristina Cardoso
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

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  9 in total

1.  Mapping Intrachannel Diffusive Dynamics of Interacting Molecules onto a Two-Site Model: Crossover in Flux Concentration Dependence.

Authors:  Alexander M Berezhkovskii; Sergey M Bezrukov
Journal:  J Phys Chem B       Date:  2018-06-29       Impact factor: 2.991

2.  Blocker escape kinetics from a membrane channel analyzed by mapping blocker diffusive dynamics onto a two-site model.

Authors:  Alexander M Berezhkovskii; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2019-05-21       Impact factor: 3.488

3.  Dependence of the Enzymatic Velocity on the Substrate Dissociation Rate.

Authors:  Alexander M Berezhkovskii; Attila Szabo; T Rotbart; M Urbakh; Anatoly B Kolomeisky
Journal:  J Phys Chem B       Date:  2016-12-01       Impact factor: 2.991

4.  Fluxes of non-interacting and strongly repelling particles through a single conical channel: Analytical results and their numerical tests.

Authors:  Alexander M Berezhkovskii; Mark A Pustovoit; Sergey M Bezrukov
Journal:  Chem Phys       Date:  2010-10-05       Impact factor: 2.348

Review 5.  Single molecule studies of nucleocytoplasmic transport.

Authors:  Li-Chun Tu; Siegfried M Musser
Journal:  Biochim Biophys Acta       Date:  2010-12-16

6.  Physics of the Nuclear Pore Complex: Theory, Modeling and Experiment.

Authors:  Bart W Hoogenboom; Loren E Hough; Edward A Lemke; Roderick Y H Lim; Patrick R Onck; Anton Zilman
Journal:  Phys Rep       Date:  2021-03-24       Impact factor: 30.510

7.  Enhancement of transport selectivity through nano-channels by non-specific competition.

Authors:  Anton Zilman; Stefano Di Talia; Tijana Jovanovic-Talisman; Brian T Chait; Michael P Rout; Marcelo O Magnasco
Journal:  PLoS Comput Biol       Date:  2010-06-10       Impact factor: 4.475

Review 8.  Deciphering the Structure and Function of Nuclear Pores Using Single-Molecule Fluorescence Approaches.

Authors:  Siegfried M Musser; David Grünwald
Journal:  J Mol Biol       Date:  2016-03-02       Impact factor: 5.469

9.  Impact of Interparticle Interaction on Thermodynamics of Nano-Channel Transport of Two Species.

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Journal:  Entropy (Basel)       Date:  2020-03-25       Impact factor: 2.524

  9 in total

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