Literature DB >> 12496079

The nuclear pore complex mystery and anomalous diffusion in reversible gels.

Thomas Bickel1, Robijn Bruinsma.   

Abstract

The exchange of macromolecules between the cytoplasm and the nucleus of eukaryotic cells takes place through the nuclear pore complex (NPC), which contains a selective permeability barrier. Experiments on the physical properties of this barrier appear to be in conflict with current physical understanding of the rheology of reversible gels. This paper proposes that the NPC gel is anomalous and characterized by connectivity fluctuations. It develops a simplified model to demonstrate the possibility of enhanced diffusion constants of macromolecules trapped in such a gel.

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Year:  2002        PMID: 12496079      PMCID: PMC1302387          DOI: 10.1016/s0006-3495(02)75312-5

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  18 in total

1.  Kinetic analysis of translocation through nuclear pore complexes.

Authors:  K Ribbeck; D Görlich
Journal:  EMBO J       Date:  2001-03-15       Impact factor: 11.598

Review 2.  The role of Ran in nuclear function.

Authors:  Y Azuma; M Dasso
Journal:  Curr Opin Cell Biol       Date:  2000-06       Impact factor: 8.382

3.  Systems analysis of Ran transport.

Authors:  Alicia E Smith; Boris M Slepchenko; James C Schaff; Leslie M Loew; Ian G Macara
Journal:  Science       Date:  2002-01-18       Impact factor: 47.728

4.  Kinetic equations for diffusion in the presence of entropic barriers.

Authors:  D Reguera; J M Rubí
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-11-21

5.  Kinetics and mechanism of DNA uptake into the cell nucleus.

Authors:  H Salman; D Zbaida; Y Rabin; D Chatenay; M Elbaum
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-05       Impact factor: 11.205

6.  Nuclear envelope permeability.

Authors:  P L Paine; L C Moore; S B Horowitz
Journal:  Nature       Date:  1975-03-13       Impact factor: 49.962

Review 7.  Toward the molecular dissection of protein import into nuclei.

Authors:  N Panté; U Aebi
Journal:  Curr Opin Cell Biol       Date:  1996-06       Impact factor: 8.382

8.  Functional analysis of the hydrophobic patch on nuclear transport factor 2 involved in interactions with the nuclear pore in vivo.

Authors:  B B Quimby; S W Leung; R Bayliss; M T Harreman; G Thirumala; M Stewart; A H Corbett
Journal:  J Biol Chem       Date:  2001-08-06       Impact factor: 5.157

9.  A polypeptide domain that specifies migration of nucleoplasmin into the nucleus.

Authors:  C Dingwall; S V Sharnick; R A Laskey
Journal:  Cell       Date:  1982-09       Impact factor: 41.582

10.  The yeast nuclear pore complex: composition, architecture, and transport mechanism.

Authors:  M P Rout; J D Aitchison; A Suprapto; K Hjertaas; Y Zhao; B T Chait
Journal:  J Cell Biol       Date:  2000-02-21       Impact factor: 10.539

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  24 in total

1.  Quantitative topographical analysis of nuclear pore complex function using scanning force microscopy.

Authors:  Rainer D Jäggi; Alfredo Franco-Obregón; Klaus Ensslin
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

2.  Metastable network model of protein transport through nuclear pores.

Authors:  T Kustanovich; Y Rabin
Journal:  Biophys J       Date:  2004-04       Impact factor: 4.033

3.  From the trap to the basket: getting to the bottom of the nuclear pore complex.

Authors:  Roderick Y H Lim; Ueli Aebi; Daniel Stoffler
Journal:  Chromosoma       Date:  2006-01-10       Impact factor: 4.316

4.  Atomic force microscopy visualises a hydrophobic meshwork in the central channel of the nuclear pore.

Authors:  Armin Kramer; Ivan Liashkovich; Yvonne Ludwig; Victor Shahin
Journal:  Pflugers Arch       Date:  2007-12-04       Impact factor: 3.657

Review 5.  Biology and biophysics of the nuclear pore complex and its components.

Authors:  Roderick Y H Lim; Katharine S Ullman; Birthe Fahrenkrog
Journal:  Int Rev Cell Mol Biol       Date:  2008       Impact factor: 6.813

6.  Managing free-energy barriers in nuclear pore transport.

Authors:  Brian Nielsen; Claus Jeppesen; John H Ipsen
Journal:  J Biol Phys       Date:  2006-12-19       Impact factor: 1.365

Review 7.  Flexible gates: dynamic topologies and functions for FG nucleoporins in nucleocytoplasmic transport.

Authors:  Laura J Terry; Susan R Wente
Journal:  Eukaryot Cell       Date:  2009-10-02

8.  Nucleocytoplasmic transport: a thermodynamic mechanism.

Authors:  Ronen Benjamine Kopito; Michael Elbaum
Journal:  HFSP J       Date:  2009-03-18

9.  Nuclear pore complex protein sequences determine overall copolymer brush structure and function.

Authors:  David Ando; Roya Zandi; Yong Woon Kim; Michael Colvin; Michael Rexach; Ajay Gopinathan
Journal:  Biophys J       Date:  2014-05-06       Impact factor: 4.033

10.  Selectivity mechanism of the nuclear pore complex characterized by single cargo tracking.

Authors:  Alan R Lowe; Jake J Siegel; Petr Kalab; Merek Siu; Karsten Weis; Jan T Liphardt
Journal:  Nature       Date:  2010-09-01       Impact factor: 49.962

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