Literature DB >> 14993707

Microseed matrix screening to improve crystals of yeast cytosine deaminase.

Gregory C Ireton1, Barry L Stoddard.   

Abstract

A crystallization strategy termed 'microseed matrix screening' is described where the optimal conditions for nucleation versus extended lattice growth are not compatible. This method is an extension of conventional seeding techniques in which microseeds from the nucleation step are systematically seeded into new conditions where all components of the drop are allowed to vary to screen for subsequent growth of well ordered specimens. The structure of a crystal form of yeast cytosine deaminase produced by streak-seeding using a single condition for both nucleation and growth is compared with the structure of a related crystal form produced by separating nucleation and growth conditions. The resulting structural comparison demonstrates that differential chelation patterns of cations by acidic surface residues of proteins within crystal lattice contacts is a critical parameter of crystal nucleation and growth.

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Year:  2004        PMID: 14993707     DOI: 10.1107/S0907444903029664

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  24 in total

1.  Crystallization of a challenging antigen-antibody complex: TLR3 ECD with three noncompeting Fabs.

Authors:  Thomas J Malia; Galina Obmolova; Jinquan Luo; Alexey Teplyakov; Raymond Sweet; Gary L Gilliland
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-09-30

2.  Semi-automated microseeding of nanolitre crystallization experiments.

Authors:  Thomas S Walter; Erika J Mancini; Jan Kadlec; Stephen C Graham; René Assenberg; Jingshan Ren; Sarah Sainsbury; Raymond J Owens; David I Stuart; Jonathan M Grimes; Karl Harlos
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-12-20

3.  Improving the success rate of protein crystallization by random microseed matrix screening.

Authors:  Marisa Till; Alice Robson; Matthew J Byrne; Asha V Nair; Stefan A Kolek; Patrick D Shaw Stewart; Paul R Race
Journal:  J Vis Exp       Date:  2013-08-31       Impact factor: 1.355

Review 4.  Optimization of crystallization conditions for biological macromolecules.

Authors:  Alexander McPherson; Bob Cudney
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-10-31       Impact factor: 1.056

5.  Expression, purification and characterization of enoyl-ACP reductase II, FabK, from Porphyromonas gingivalis.

Authors:  Kirk E Hevener; Shahila Mehboob; Teuta Boci; Kent Truong; Bernard D Santarsiero; Michael E Johnson
Journal:  Protein Expr Purif       Date:  2012-07-20       Impact factor: 1.650

6.  Microseed matrix screening for optimization in protein crystallization: what have we learned?

Authors:  Allan D'Arcy; Terese Bergfors; Sandra W Cowan-Jacob; May Marsh
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-08-29       Impact factor: 1.056

7.  Crystallization of an apo form of human arginase: using all the tools in the toolbox simultaneously.

Authors:  Janet Newman; Lesley Pearce; Charles A Lesburg; Corey Strickland; Thomas S Peat
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-12-23

8.  A novel microseeding method for the crystallization of membrane proteins in lipidic cubic phase.

Authors:  Stefan Andrew Kolek; Bastian Bräuning; Patrick Douglas Shaw Stewart
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-03-24       Impact factor: 1.056

9.  Promoting crystallization of antibody-antigen complexes via microseed matrix screening.

Authors:  Galina Obmolova; Thomas J Malia; Alexey Teplyakov; Raymond Sweet; Gary L Gilliland
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-07-14

10.  The contribution of polystyrene nanospheres towards the crystallization of proteins.

Authors:  Johanna M Kallio; Nina Hakulinen; Juha P Kallio; Merja H Niemi; Susanna Kärkkäinen; Juha Rouvinen
Journal:  PLoS One       Date:  2009-01-15       Impact factor: 3.240

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