Literature DB >> 24022545

Improving the success rate of protein crystallization by random microseed matrix screening.

Marisa Till1, Alice Robson, Matthew J Byrne, Asha V Nair, Stefan A Kolek, Patrick D Shaw Stewart, Paul R Race.   

Abstract

Random microseed matrix screening (rMMS) is a protein crystallization technique in which seed crystals are added to random screens. By increasing the likelihood that crystals will grow in the metastable zone of a protein's phase diagram, extra crystallization leads are often obtained, the quality of crystals produced may be increased, and a good supply of crystals for data collection and soaking experiments is provided. Here we describe a general method for rMMS that may be applied to either sitting drop or hanging drop vapor diffusion experiments, established either by hand or using liquid handling robotics, in 96-well or 24-well tray format.

Mesh:

Substances:

Year:  2013        PMID: 24022545      PMCID: PMC3857131          DOI: 10.3791/50548

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  13 in total

1.  Microseed matrix screening to improve crystals of yeast cytosine deaminase.

Authors:  Gregory C Ireton; Barry L Stoddard
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-02-25

2.  Acoustic matrix microseeding: improving protein crystal growth with minimal chemical bias.

Authors:  Armando G Villaseñor; April Wong; Ada Shao; Ankur Garg; Andreas Kuglstatter; Seth F Harris
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-04-21

3.  Predicting protein crystallization propensity from protein sequence.

Authors:  György Babnigg; Andrzej Joachimiak
Journal:  J Struct Funct Genomics       Date:  2010-02-23

4.  Optimizing protein crystal growth through dynamic seeding.

Authors:  De-Yu Zhu; Yong-Qun Zhu; Ye Xiang; Da-Cheng Wang
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-05-26

5.  Screening and optimization methods for nonautomated crystallization laboratories.

Authors:  Terese Bergfors
Journal:  Methods Mol Biol       Date:  2007

Review 6.  Thirty years of heme catalases structural biology.

Authors:  Adelaida Díaz; Peter C Loewen; Ignacio Fita; Xavi Carpena
Journal:  Arch Biochem Biophys       Date:  2011-12-23       Impact factor: 4.013

7.  An automated microseed matrix-screening method for protein crystallization.

Authors:  Allan D'Arcy; Frederic Villard; May Marsh
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-03-16

Review 8.  Lysozyme: a model enzyme in protein crystallography.

Authors:  N C Strynadka; M N James
Journal:  EXS       Date:  1996

9.  Improving the diffraction of full-length human selenomethionyl metavinculin crystals by streak-seeding.

Authors:  Erumbi S Rangarajan; Tina Izard
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-11-25

10.  Promoting crystallization of antibody-antigen complexes via microseed matrix screening.

Authors:  Galina Obmolova; Thomas J Malia; Alexey Teplyakov; Raymond Sweet; Gary L Gilliland
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-07-14
View more
  9 in total

1.  Inhibition, crystal structures, and in-solution oligomeric structure of aldehyde dehydrogenase 9A1.

Authors:  Jesse W Wyatt; David A Korasick; Insaf A Qureshi; Ashley C Campbell; Kent S Gates; John J Tanner
Journal:  Arch Biochem Biophys       Date:  2020-07-24       Impact factor: 4.013

2.  Automation in biological crystallization.

Authors:  Patrick Shaw Stewart; Jochen Mueller-Dieckmann
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-05-28       Impact factor: 1.056

3.  Characterizing metal-binding sites in proteins with X-ray crystallography.

Authors:  Katarzyna B Handing; Ewa Niedzialkowska; Ivan G Shabalin; Misty L Kuhn; Heping Zheng; Wladek Minor
Journal:  Nat Protoc       Date:  2018-04-19       Impact factor: 13.491

4.  Structural analysis of pathogenic mutations targeting Glu427 of ALDH7A1, the hot spot residue of pyridoxine-dependent epilepsy.

Authors:  Adrian R Laciak; David A Korasick; Kent S Gates; John J Tanner
Journal:  J Inherit Metab Dis       Date:  2019-12-01       Impact factor: 4.982

5.  Biophysical and Structural Characterization of Novel RAS-Binding Domains (RBDs) of PI3Kα and PI3Kγ.

Authors:  Nicholas G Martinez; David F Thieker; Leiah M Carey; Juhi A Rasquinha; Samantha K Kistler; Brian A Kuhlman; Sharon L Campbell
Journal:  J Mol Biol       Date:  2021-02-01       Impact factor: 5.469

6.  Regulators of complement activity mediate inhibitory mechanisms through a common C3b-binding mode.

Authors:  Federico Forneris; Jin Wu; Xiaoguang Xue; Daniel Ricklin; Zhuoer Lin; Georgia Sfyroera; Apostolia Tzekou; Elena Volokhina; Joke Cm Granneman; Richard Hauhart; Paula Bertram; M Kathryn Liszewski; John P Atkinson; John D Lambris; Piet Gros
Journal:  EMBO J       Date:  2016-03-24       Impact factor: 11.598

7.  Automated Protocols for Macromolecular Crystallization at the MRC Laboratory of Molecular Biology.

Authors:  Fabrice Gorrec; Jan Löwe
Journal:  J Vis Exp       Date:  2018-01-24       Impact factor: 1.355

8.  Characterization of Glycoproteins with the Immunoglobulin Fold by X-Ray Crystallography and Biophysical Techniques.

Authors:  June Ereño-Orbea; Taylor Sicard; Hong Cui; Indira Akula; Jean-Philippe Julien
Journal:  J Vis Exp       Date:  2018-07-05       Impact factor: 1.355

9.  Macrophage migration inhibitory factor of Syrian golden hamster shares structural and functional similarity with human counterpart and promotes pancreatic cancer.

Authors:  Voddu Suresh; Rajivgandhi Sundaram; Pujarini Dash; Surendra Chandra Sabat; Debasish Mohapatra; Sneha Mohanty; Dileep Vasudevan; Shantibhusan Senapati
Journal:  Sci Rep       Date:  2019-10-29       Impact factor: 4.379

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.