Literature DB >> 27050265

A novel microseeding method for the crystallization of membrane proteins in lipidic cubic phase.

Stefan Andrew Kolek1, Bastian Bräuning2, Patrick Douglas Shaw Stewart1.   

Abstract

Random microseed matrix screening (rMMS), in which seed crystals are added to random crystallization screens, is an important breakthrough in soluble protein crystallization that increases the number of crystallization hits that are available for optimization. This greatly increases the number of soluble protein structures generated every year by typical structural biology laboratories. Inspired by this success, rMMS has been adapted to the crystallization of membrane proteins, making LCP seed stock by scaling up LCP crystallization conditions without changing the physical and chemical parameters that are critical for crystallization. Seed crystals are grown directly in LCP and, as with conventional rMMS, a seeding experiment is combined with an additive experiment. The new method was used with the bacterial integral membrane protein OmpF, and it was found that it increased the number of crystallization hits by almost an order of magnitude: without microseeding one new hit was found, whereas with LCP-rMMS eight new hits were found. It is anticipated that this new method will lead to better diffracting crystals of membrane proteins. A method of generating seed gradients, which allows the LCP seed stock to be diluted and the number of crystals in each LCP bolus to be reduced, if required for optimization, is also demonstrated.

Keywords:  lipidic cubic phase; membrane-protein crystallization; microseed matrix screening; microseeding

Mesh:

Substances:

Year:  2016        PMID: 27050265      PMCID: PMC4822988          DOI: 10.1107/S2053230X16004118

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  11 in total

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Authors:  Areej Abuhammad; Edward D Lowe; Michael A McDonough; Patrick D Shaw Stewart; Stefan A Kolek; Edith Sim; Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-07-17

2.  Drug-target network.

Authors:  Muhammed A Yildirim; Kwang-Il Goh; Michael E Cusick; Albert-László Barabási; Marc Vidal
Journal:  Nat Biotechnol       Date:  2007-10       Impact factor: 54.908

3.  An automated microseed matrix-screening method for protein crystallization.

Authors:  Allan D'Arcy; Frederic Villard; May Marsh
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-03-16

4.  Structure of Escherichia coli OmpF porin from lipidic mesophase.

Authors:  Rouslan G Efremov; Leonid A Sazanov
Journal:  J Struct Biol       Date:  2012-03-29       Impact factor: 2.867

5.  Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography.

Authors:  Uwe Weierstall; Daniel James; Chong Wang; Thomas A White; Dingjie Wang; Wei Liu; John C H Spence; R Bruce Doak; Garrett Nelson; Petra Fromme; Raimund Fromme; Ingo Grotjohann; Christopher Kupitz; Nadia A Zatsepin; Haiguang Liu; Shibom Basu; Daniel Wacker; Gye Won Han; Vsevolod Katritch; Sébastien Boutet; Marc Messerschmidt; Garth J Williams; Jason E Koglin; M Marvin Seibert; Markus Klinker; Cornelius Gati; Robert L Shoeman; Anton Barty; Henry N Chapman; Richard A Kirian; Kenneth R Beyerlein; Raymond C Stevens; Dianfan Li; Syed T A Shah; Nicole Howe; Martin Caffrey; Vadim Cherezov
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

6.  Promoting crystallization of antibody-antigen complexes via microseed matrix screening.

Authors:  Galina Obmolova; Thomas J Malia; Alexey Teplyakov; Raymond Sweet; Gary L Gilliland
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-07-14

7.  Crystallization of SHARPIN using an automated two-dimensional grid screen for optimization.

Authors:  Benjamin Stieglitz; Katrin Rittinger; Lesley F Haire
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-06-28

8.  Seeding for sirtuins: microseed matrix seeding to obtain crystals of human Sirt3 and Sirt2 suitable for soaking.

Authors:  Tobias Rumpf; Stefan Gerhardt; Oliver Einsle; Manfred Jung
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-11-18       Impact factor: 1.056

9.  Reassembly and co-crystallization of a family 9 processive endoglucanase from its component parts: structural and functional significance of the intermodular linker.

Authors:  Svetlana Petkun; Inna Rozman Grinberg; Raphael Lamed; Sadanari Jindou; Tal Burstein; Oren Yaniv; Yuval Shoham; Linda J W Shimon; Edward A Bayer; Felix Frolow
Journal:  PeerJ       Date:  2015-09-15       Impact factor: 2.984

Review 10.  Membrane protein structure determination - the next generation.

Authors:  Isabel Moraes; Gwyndaf Evans; Juan Sanchez-Weatherby; Simon Newstead; Patrick D Shaw Stewart
Journal:  Biochim Biophys Acta       Date:  2013-07-13
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  1 in total

1.  Lipidic cubic phase serial femtosecond crystallography structure of a photosynthetic reaction centre.

Authors:  Petra Båth; Analia Banacore; Per Börjesson; Robert Bosman; Cecilia Wickstrand; Cecilia Safari; Robert Dods; Swagatha Ghosh; Peter Dahl; Giorgia Ortolani; Tinna Björg Ulfarsdottir; Greger Hammarin; María José García Bonete; Adams Vallejos; Lucija Ostojić; Petra Edlund; Johanna Barbara Linse; Rebecka Andersson; Eriko Nango; Shigeki Owada; Rie Tanaka; Kensuke Tono; Yasumasa Joti; Osamu Nureki; Fangjia Luo; Daniel James; Karol Nass; Philip J M Johnson; Gregor Knopp; Dmitry Ozerov; Claudio Cirelli; Christopher Milne; So Iwata; Gisela Brändén; Richard Neutze
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-05-25       Impact factor: 5.699

  1 in total

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