Literature DB >> 14983004

Design of artificial cell-cell communication using gene and metabolic networks.

Thomas Bulter1, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R Connor, James C Liao.   

Abstract

Artificial transcriptional networks have been used to achieve novel, nonnative behavior in bacteria. Typically, these artificial circuits are isolated from cellular metabolism and are designed to function without intercellular communication. To attain concerted biological behavior in a population, synchronization through intercellular communication is highly desirable. Here we demonstrate the design and construction of a gene-metabolic circuit that uses a common metabolite to achieve tunable artificial cell-cell communication. This circuit uses a threshold concentration of acetate to induce gene expression by acetate kinase and part of the nitrogen-regulation two-component system. As one application of the cell-cell communication circuit we created an artificial quorum sensor. Engineering of carbon metabolism in Escherichia coli made acetate secretion proportional to cell density and independent of oxygen availability. In these cells the circuit induced gene expression in response to a threshold cell density. This threshold can be tuned effectively by controlling DeltapH over the cell membrane, which determines the partition of acetate between medium and cells. Mutagenesis of the enhancer sequence of the glnAp2 promoter produced variants of the circuit with changed sensitivity demonstrating tunability of the circuit by engineering of its components. The behavior of the circuit shows remarkable predictability based on a mathematical design model.

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Year:  2004        PMID: 14983004      PMCID: PMC356945          DOI: 10.1073/pnas.0306484101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  Effect of inactivation of nuo and ackA-pta on redistribution of metabolic fluxes in Escherichia coli.

Authors:  Y T Yang; G N Bennett; K Y San
Journal:  Biotechnol Bioeng       Date:  1999-11-05       Impact factor: 4.530

Review 2.  How bacteria talk to each other: regulation of gene expression by quorum sensing.

Authors:  B L Bassler
Journal:  Curr Opin Microbiol       Date:  1999-12       Impact factor: 7.934

3.  Construction of a genetic toggle switch in Escherichia coli.

Authors:  T S Gardner; C R Cantor; J J Collins
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

4.  A synthetic oscillatory network of transcriptional regulators.

Authors:  M B Elowitz; S Leibler
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

5.  Engineering stability in gene networks by autoregulation.

Authors:  A Becskei; L Serrano
Journal:  Nature       Date:  2000-06-01       Impact factor: 49.962

6.  Improving lycopene production in Escherichia coli by engineering metabolic control.

Authors:  W R Farmer; J C Liao
Journal:  Nat Biotechnol       Date:  2000-05       Impact factor: 54.908

7.  Involvement of acetyl phosphate in the in vivo activation of the response regulator ComA in Bacillus subtilis.

Authors:  S B Kim; B S Shin; S K Choi; C K Kim; S H Park
Journal:  FEMS Microbiol Lett       Date:  2001-02-20       Impact factor: 2.742

8.  Acetate metabolism in a pta mutant of Escherichia coli W3110: importance of maintaining acetyl coenzyme A flux for growth and survival.

Authors:  D E Chang; S Shin; J S Rhee; J G Pan
Journal:  J Bacteriol       Date:  1999-11       Impact factor: 3.490

Review 9.  Engineered gene circuits.

Authors:  Jeff Hasty; David McMillen; J J Collins
Journal:  Nature       Date:  2002-11-14       Impact factor: 49.962

10.  Catabolite regulation of the pta gene as part of carbon flow pathways in Bacillus subtilis.

Authors:  E Presecan-Siedel; A Galinier; R Longin; J Deutscher; A Danchin; P Glaser; I Martin-Verstraete
Journal:  J Bacteriol       Date:  1999-11       Impact factor: 3.490

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  32 in total

1.  LuxS coexpression enhances yields of recombinant proteins in Escherichia coli in part through posttranscriptional control of GroEL.

Authors:  Chen-Yu Tsao; Liang Wang; Yoshifumi Hashimoto; Hyunmin Yi; John C March; Matthew P DeLisa; Thomas K Wood; James J Valdes; William E Bentley
Journal:  Appl Environ Microbiol       Date:  2011-01-28       Impact factor: 4.792

2.  Programmable cells: interfacing natural and engineered gene networks.

Authors:  Hideki Kobayashi; Mads Kaern; Michihiro Araki; Kristy Chung; Timothy S Gardner; Charles R Cantor; James J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-24       Impact factor: 11.205

3.  Teaching bacteria a new language.

Authors:  Yoram Gerchman; Ron Weiss
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-24       Impact factor: 11.205

Review 4.  The acetate switch.

Authors:  Alan J Wolfe
Journal:  Microbiol Mol Biol Rev       Date:  2005-03       Impact factor: 11.056

Review 5.  Biology by design: reduction and synthesis of cellular components and behaviour.

Authors:  Philippe Marguet; Frederick Balagadde; Cheemeng Tan; Lingchong You
Journal:  J R Soc Interface       Date:  2007-08-22       Impact factor: 4.118

6.  Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium.

Authors:  Katie Brenner; David K Karig; Ron Weiss; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-24       Impact factor: 11.205

Review 7.  The second wave of synthetic biology: from modules to systems.

Authors:  Priscilla E M Purnick; Ron Weiss
Journal:  Nat Rev Mol Cell Biol       Date:  2009-06       Impact factor: 94.444

Review 8.  Programming microbial population dynamics by engineered cell-cell communication.

Authors:  Hao Song; Stephen Payne; Cheemeng Tan; Lingchong You
Journal:  Biotechnol J       Date:  2011-06-16       Impact factor: 4.677

Review 9.  Towards genome-scale signalling network reconstructions.

Authors:  Daniel R Hyduke; Bernhard Ø Palsson
Journal:  Nat Rev Genet       Date:  2010-04       Impact factor: 53.242

10.  A systematic design method for robust synthetic biology to satisfy design specifications.

Authors:  Bor-Sen Chen; Chih-Hung Wu
Journal:  BMC Syst Biol       Date:  2009-06-30
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