Literature DB >> 10850721

Engineering stability in gene networks by autoregulation.

A Becskei1, L Serrano.   

Abstract

The genetic and biochemical networks which underlie such things as homeostasis in metabolism and the developmental programs of living cells, must withstand considerable variations and random perturbations of biochemical parameters. These occur as transient changes in, for example, transcription, translation, and RNA and protein degradation. The intensity and duration of these perturbations differ between cells in a population. The unique state of cells, and thus the diversity in a population, is owing to the different environmental stimuli the individual cells experience and the inherent stochastic nature of biochemical processes (for example, refs 5 and 6). It has been proposed, but not demonstrated, that autoregulatory, negative feedback loops in gene circuits provide stability, thereby limiting the range over which the concentrations of network components fluctuate. Here we have designed and constructed simple gene circuits consisting of a regulator and transcriptional repressor modules in Escherichia coli and we show the gain of stability produced by negative feedback.

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Year:  2000        PMID: 10850721     DOI: 10.1038/35014651

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  461 in total

1.  Dynamic modeling of gene expression data.

Authors:  N S Holter; A Maritan; M Cieplak; N V Fedoroff; J R Banavar
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

2.  Octamerization of lambda CI repressor is needed for effective repression of P(RM) and efficient switching from lysogeny.

Authors:  I B Dodd; A J Perkins; D Tsemitsidis; J B Egan
Journal:  Genes Dev       Date:  2001-11-15       Impact factor: 11.361

3.  Intrinsic noise in gene regulatory networks.

Authors:  M Thattai; A van Oudenaarden
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

4.  Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion.

Authors:  A Becskei; B Séraphin; L Serrano
Journal:  EMBO J       Date:  2001-05-15       Impact factor: 11.598

5.  Attenuation of noise in ultrasensitive signaling cascades.

Authors:  Mukund Thattai; Alexander van Oudenaarden
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

6.  Efficient biallelic mutagenesis with Cre/loxP-mediated inter-chromosomal recombination.

Authors:  Hiroko Koike; Kyoji Horie; Hidehiro Fukuyama; Gen Kondoh; Shigekazu Nagata; Junji Takeda
Journal:  EMBO Rep       Date:  2002-04-18       Impact factor: 8.807

7.  Frequency domain analysis of noise in autoregulated gene circuits.

Authors:  Michael L Simpson; Chris D Cox; Gary S Sayler
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-01       Impact factor: 11.205

8.  Directed evolution of a genetic circuit.

Authors:  Yohei Yokobayashi; Ron Weiss; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-25       Impact factor: 11.205

9.  Negative autoregulation of BCL-6 is bypassed by genetic alterations in diffuse large B cell lymphomas.

Authors:  Xing Wang; Zhiping Li; Akira Naganuma; B Hilda Ye
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-29       Impact factor: 11.205

10.  A MicroRNA feedback circuit in midbrain dopamine neurons.

Authors:  Jongpil Kim; Keiichi Inoue; Jennifer Ishii; William B Vanti; Sergey V Voronov; Elizabeth Murchison; Gregory Hannon; Asa Abeliovich
Journal:  Science       Date:  2007-08-31       Impact factor: 47.728

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