Literature DB >> 14752099

How O2 binds to heme: reasons for rapid binding and spin inversion.

Kasper P Jensen1, Ulf Ryde.   

Abstract

We have used density functional methods to calculate fully relaxed potential energy curves of the seven lowest electronic states during the binding of O(2) to a realistic model of ferrous deoxyheme. Beyond a Fe-O distance of approximately 2.5 A, we find a broad crossing region with five electronic states within 15 kJ/mol. The almost parallel surfaces strongly facilitate spin inversion, which is necessary in the reaction of O(2) with heme (deoxyheme is a quintet and O(2) a triplet, whereas oxyheme is a singlet). Thus, despite a small spin-orbit coupling in heme, the transition probability approaches unity. Using reasonable parameters, we estimate a transition probability of 0.06-1, which is at least 15 times larger than for the nonbiological Fe-O(+) system. Spin crossing is anticipated between the singlet ground state of bound oxyheme, the triplet and septet dissociation states, and a quintet intermediate state. The fact that the quintet state is close in energy to the dissociation couple is of biological importance, because it explains how both spin states of O(2) may bind to heme, thereby increasing the overall efficiency of oxygen binding. The activation barrier is estimated to be <15 kJ/mol based on our results and Mössbauer experiments. Our results indicate that both the activation energy and the spin-transition probability are tuned by the porphyrin as well as by the choice of the proximal heme ligand, which is a histidine in the globins. Together, they may accelerate O(2) binding to iron by approximately 10(11) compared with the Fe-O(+) system. A similar near degeneracy between spin states is observed in a ferric deoxyheme model with the histidine ligand hydrogen bonded to a carboxylate group, i.e. a model of heme peroxidases, which bind H(2)O(2) in this oxidation state.

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Year:  2004        PMID: 14752099     DOI: 10.1074/jbc.M314007200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  25 in total

1.  Quantum chemical DFT study of the interaction between molecular oxygen and FeN₄ complexes, and effect of the macrocyclic ligand.

Authors:  Adilson Luís Pereira Silva; Luciano Farias de Almeida; Aldaléa Lopes Brandes Marques; Hawbertt Rocha Costa; Auro Atsushi Tanaka; Albérico Borges Ferreira da Silva; Jaldyr de Jesus Gomes Varela
Journal:  J Mol Model       Date:  2014-02-25       Impact factor: 1.810

2.  Resonant inelastic X-ray scattering determination of the electronic structure of oxyhemoglobin and its model complex.

Authors:  James J Yan; Thomas Kroll; Michael L Baker; Samuel A Wilson; Richard Decréau; Marcus Lundberg; Dimosthenis Sokaras; Pieter Glatzel; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-04       Impact factor: 11.205

3.  Iron L-edge X-ray absorption spectroscopy of oxy-picket fence porphyrin: experimental insight into Fe-O2 bonding.

Authors:  Samuel A Wilson; Thomas Kroll; Richard A Decreau; Rosalie K Hocking; Marcus Lundberg; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2013-01-10       Impact factor: 15.419

4.  DFT Fea3-O/O-O Vibrational Frequency Calculations over Catalytic Reaction Cycle States in the Dinuclear Center of Cytochrome c Oxidase.

Authors:  Wen-Ge Han Du; Andreas W Götz; Louis Noodleman
Journal:  Inorg Chem       Date:  2019-09-30       Impact factor: 5.165

5.  Fe L-edge X-ray absorption spectroscopy of low-spin heme relative to non-heme Fe complexes: delocalization of Fe d-electrons into the porphyrin ligand.

Authors:  Rosalie K Hocking; Erik C Wasinger; Yi-Long Yan; Frank M F Degroot; F Ann Walker; Keith O Hodgson; Britt Hedman; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2007-01-10       Impact factor: 15.419

Review 6.  Ambidentate H-bonding of NO and O2 in heme proteins.

Authors:  Thomas G Spiro; Alexandra V Soldatova
Journal:  J Inorg Biochem       Date:  2012-06-01       Impact factor: 4.155

7.  Modeling of peroxide activation in artemisinin derivatives by serial docking.

Authors:  Roy J Little; Alexis A Pestano; Zaida Parra
Journal:  J Mol Model       Date:  2009-01-14       Impact factor: 1.810

8.  Intermediate P* from soluble methane monooxygenase contains a diferrous cluster.

Authors:  Rahul Banerjee; Katlyn K Meier; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2013-06-13       Impact factor: 3.162

9.  Effects of imidazole deprotonation on vibrational spectra of high-spin iron(II) porphyrinates.

Authors:  Chuanjiang Hu; Qian Peng; Nathan J Silvernail; Alexander Barabanschikov; Jiyong Zhao; E Ercan Alp; Wolfgang Sturhahn; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2013-03-07       Impact factor: 5.165

10.  CO, NO and O2 as Vibrational Probes of Heme Protein Interactions.

Authors:  Thomas G Spiro; Alexandra V Soldatova; Gurusamy Balakrishnan
Journal:  Coord Chem Rev       Date:  2012-06-06       Impact factor: 22.315

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