Literature DB >> 23718184

Intermediate P* from soluble methane monooxygenase contains a diferrous cluster.

Rahul Banerjee1, Katlyn K Meier, Eckard Münck, John D Lipscomb.   

Abstract

During a single turnover of the hydroxylase component (MMOH) of soluble methane monooxygenase from Methylosinus trichosporium OB3b, several discrete intermediates are formed. The diiron cluster of MMOH is first reduced to the Fe(II)Fe(II) state (H(red)). O₂ binds rapidly at a site away from the cluster to form the Fe(II)Fe(II) intermediate O, which converts to an Fe(III)Fe(III)-peroxo intermediate P and finally to the Fe(IV)Fe(IV) intermediate Q. Q binds and reacts with methane to yield methanol and water. The rate constants for these steps are increased by a regulatory protein, MMOB. Previously reported transient kinetic studies have suggested that an intermediate P* forms between O and P in which the g = 16 EPR signal characteristic of the reduced diiron cluster of H(red) and O is lost. This was interpreted as signaling oxidation of the cluster, but a low level of accumulation of P* prevented further characterization. In this study, three methods for directly detecting and trapping P* are applied together to allow its spectroscopic and kinetic characterization. First, the MMOB mutant His33Ala is used to specifically slow the decay of P* without affecting its formation rate, leading to its nearly quantitative accumulation. Second, spectra-kinetic data collection is used to provide a sensitive measure of the formation and decay rate constants of intermediates as well as their optical spectra. Finally, the substrate furan is included to react with Q and quench its strong chromophore. The optical spectrum of P* closely mimics those of H(red) and O, but it is distinctly different from that of P. The reaction cycle rate constants allowed prediction of the times for maximal accumulation of the intermediates. Mössbauer spectra of rapid freeze-quench samples at these times show that the intermediates are formed at almost exactly the predicted levels. The Mössbauer spectra show that the diiron cluster of P*, quite unexpectedly, is in the Fe(II)Fe(II) state. Thus, the loss of the g = 16 EPR signal results from a change in the electronic structure of the Fe(II)Fe(II) center rather than oxidation. The similarity of the optical and Mössbauer spectra of H(red), O, and P* suggests that only subtle changes occur in the electronic and physical structure of the diiron cluster as P* forms. Nevertheless, the changes that do occur are necessary for O₂ to be activated for hydrocarbon oxidation.

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Year:  2013        PMID: 23718184      PMCID: PMC3712755          DOI: 10.1021/bi400182y

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  55 in total

1.  Kinetics and activation thermodynamics of methane monooxygenase compound Q formation and reaction with substrates.

Authors:  B J Brazeau; J D Lipscomb
Journal:  Biochemistry       Date:  2000-11-07       Impact factor: 3.162

2.  Characterization of a high-spin non-heme Fe(III)-OOH intermediate and its quantitative conversion to an Fe(IV)═O complex.

Authors:  Feifei Li; Katlyn K Meier; Matthew A Cranswick; Mrinmoy Chakrabarti; Katherine M Van Heuvelen; Eckard Münck; Lawrence Que
Journal:  J Am Chem Soc       Date:  2011-04-25       Impact factor: 15.419

3.  Methane monooxygenase hydroxylase and B component interactions.

Authors:  Jingyan Zhang; Bradley J Wallar; Codrina V Popescu; Daniel B Renner; David D Thomas; John D Lipscomb
Journal:  Biochemistry       Date:  2006-03-07       Impact factor: 3.162

4.  Effect of heme modification on oxygen affinity of myoglobin and equilibrium of the acid-alkaline transition in metmyoglobin.

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Journal:  J Am Chem Soc       Date:  2010-05-05       Impact factor: 15.419

Review 5.  Mössbauer spectroscopy of metalloproteins and the use of Fourier transforms.

Authors:  W R Dunham; L J Harding; R H Sands
Journal:  Eur J Biochem       Date:  1993-05-15

Review 6.  Dioxygen activation in soluble methane monooxygenase.

Authors:  Christine E Tinberg; Stephen J Lippard
Journal:  Acc Chem Res       Date:  2011-03-10       Impact factor: 22.384

7.  A diiron(IV) complex that cleaves strong C-H and O-H bonds.

Authors:  Dong Wang; Erik R Farquhar; Audria Stubna; Eckard Münck; Lawrence Que
Journal:  Nat Chem       Date:  2009-05       Impact factor: 24.427

8.  Revisiting the mechanism of dioxygen activation in soluble methane monooxygenase from M. capsulatus (Bath): evidence for a multi-step, proton-dependent reaction pathway.

Authors:  Christine E Tinberg; Stephen J Lippard
Journal:  Biochemistry       Date:  2009-12-29       Impact factor: 3.162

9.  CD and MCD studies of the effects of component B variant binding on the biferrous active site of methane monooxygenase.

Authors:  Natasa Mitić; Jennifer K Schwartz; Brian J Brazeau; John D Lipscomb; Edward I Solomon
Journal:  Biochemistry       Date:  2008-07-16       Impact factor: 3.162

10.  Probing the function of heme distortion in the H-NOX family.

Authors:  Charles Olea; Elizabeth M Boon; Patricia Pellicena; John Kuriyan; Michael A Marletta
Journal:  ACS Chem Biol       Date:  2008-11-21       Impact factor: 5.100

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  27 in total

1.  High-Resolution Extended X-ray Absorption Fine Structure Analysis Provides Evidence for a Longer Fe···Fe Distance in the Q Intermediate of Methane Monooxygenase.

Authors:  George E Cutsail; Rahul Banerjee; Ang Zhou; Lawrence Que; John D Lipscomb; Serena DeBeer
Journal:  J Am Chem Soc       Date:  2018-11-16       Impact factor: 15.419

2.  An unusual peroxo intermediate of the arylamine oxygenase of the chloramphenicol biosynthetic pathway.

Authors:  Thomas M Makris; Van V Vu; Katlyn K Meier; Anna J Komor; Brent S Rivard; Eckard Münck; Lawrence Que; John D Lipscomb
Journal:  J Am Chem Soc       Date:  2015-01-21       Impact factor: 15.419

3.  Life in a sea of oxygen.

Authors:  John D Lipscomb
Journal:  J Biol Chem       Date:  2014-04-15       Impact factor: 5.157

4.  Spectroscopy and DFT Calculations of a Flavo-diiron Enzyme Implicate New Diiron Site Structures.

Authors:  Andrew C Weitz; Nitai Giri; Jonathan D Caranto; Donald M Kurtz; Emile L Bominaar; Michael P Hendrich
Journal:  J Am Chem Soc       Date:  2017-08-16       Impact factor: 15.419

5.  Heme-thiolate ferryl of aromatic peroxygenase is basic and reactive.

Authors:  Xiaoshi Wang; René Ullrich; Martin Hofrichter; John T Groves
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-10       Impact factor: 11.205

Review 6.  A tale of two methane monooxygenases.

Authors:  Matthew O Ross; Amy C Rosenzweig
Journal:  J Biol Inorg Chem       Date:  2016-11-22       Impact factor: 3.358

7.  High-Resolution XFEL Structure of the Soluble Methane Monooxygenase Hydroxylase Complex with its Regulatory Component at Ambient Temperature in Two Oxidation States.

Authors:  Vivek Srinivas; Rahul Banerjee; Hugo Lebrette; Jason C Jones; Oskar Aurelius; In-Sik Kim; Cindy C Pham; Sheraz Gul; Kyle D Sutherlin; Asmit Bhowmick; Juliane John; Esra Bozkurt; Thomas Fransson; Pierre Aller; Agata Butryn; Isabel Bogacz; Philipp Simon; Stephen Keable; Alexander Britz; Kensuke Tono; Kyung Sook Kim; Sang-Youn Park; Sang Jae Lee; Jaehyun Park; Roberto Alonso-Mori; Franklin D Fuller; Alexander Batyuk; Aaron S Brewster; Uwe Bergmann; Nicholas K Sauter; Allen M Orville; Vittal K Yachandra; Junko Yano; John D Lipscomb; Jan Kern; Martin Högbom
Journal:  J Am Chem Soc       Date:  2020-08-05       Impact factor: 15.419

8.  A Carboxylate Shift Regulates Dioxygen Activation by the Diiron Nonheme β-Hydroxylase CmlA upon Binding of a Substrate-Loaded Nonribosomal Peptide Synthetase.

Authors:  Andrew J Jasniewski; Cory J Knoot; John D Lipscomb; Lawrence Que
Journal:  Biochemistry       Date:  2016-10-07       Impact factor: 3.162

Review 9.  Diiron monooxygenases in natural product biosynthesis.

Authors:  Anna J Komor; Andrew J Jasniewski; Lawrence Que; John D Lipscomb
Journal:  Nat Prod Rep       Date:  2018-07-18       Impact factor: 13.423

Review 10.  Methane-Oxidizing Enzymes: An Upstream Problem in Biological Gas-to-Liquids Conversion.

Authors:  Thomas J Lawton; Amy C Rosenzweig
Journal:  J Am Chem Soc       Date:  2016-07-19       Impact factor: 15.419

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