Literature DB >> 15326033

Permeation properties of an engineered bacterial OmpF porin containing the EEEE-locus of Ca2+ channels.

Henk Miedema1, Anita Meter-Arkema, Jenny Wierenga, John Tang, Bob Eisenberg, Wolfgang Nonner, Hans Hektor, Dirk Gillespie, Wim Meijberg.   

Abstract

The selectivity filter of the bacterial porin OmpF carries a small net charge close to -1 e and is therefore only slightly cation-selective. Calcium channels, on the other hand, contain four negatively charged glutamates, the EEEE-locus, and are among the most selective cation channels known. We aimed to turn the essentially nonselective OmpF into a Ca2+-selective channel. To that end, two additional glutamates (R42E and R132E) were introduced in the OmpF constriction zone that already contains D113 and E117. Mutant OmpF containing this DEEE-locus has a high Ca2+ over Cl- selectivity and a Na+ current with a strongly increased sensitivity to 1 mM Ca2+. The charge/space competition model, initially applied to the L-type Ca2+ channel, identifies the fixed charge and filter volume as key determinants of ion selectivity, with the precise atomic arrangement having only second-order effects. By implication, the reproduction of fixed charge and filter volume should transform two channels into channels of similar selectivity, even if the two belong to entirely different ion channel families, as is the case for OmpF and the L-type Ca2+ channel. The results presented here fit quite well in the framework of charge/space competition theory.

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Year:  2004        PMID: 15326033      PMCID: PMC1304784          DOI: 10.1529/biophysj.104.041384

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  36 in total

1.  Brownian dynamics simulation of ion flow through porin channels.

Authors:  T Schirmer; P S Phale
Journal:  J Mol Biol       Date:  1999-12-17       Impact factor: 5.469

2.  A prokaryotic voltage-gated sodium channel.

Authors:  D Ren; B Navarro; H Xu; L Yue; Q Shi; D E Clapham
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

3.  Physiology. A one-domain voltage-gated sodium channel in bacteria.

Authors:  W A Catterall
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

4.  Imaging the electrostatic potential of transmembrane channels: atomic probe microscopy of OmpF porin.

Authors:  Ansgar Philippsen; Wonpil Im; Andreas Engel; Tilman Schirmer; Benoit Roux; Daniel J Müller
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

5.  Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation.

Authors:  P S Phale; A Philippsen; C Widmer; V P Phale; J P Rosenbusch; T Schirmer
Journal:  Biochemistry       Date:  2001-05-29       Impact factor: 3.162

6.  Binding and selectivity in L-type calcium channels: a mean spherical approximation.

Authors:  W Nonner; L Catacuzzeno; B Eisenberg
Journal:  Biophys J       Date:  2000-10       Impact factor: 4.033

7.  Physical descriptions of experimental selectivity measurements in ion channels.

Authors:  Dirk Gillespie; Robert S Eisenberg
Journal:  Eur Biophys J       Date:  2002-07-16       Impact factor: 1.733

8.  Ion permeation and selectivity of OmpF porin: a theoretical study based on molecular dynamics, Brownian dynamics, and continuum electrodiffusion theory.

Authors:  Wonpil Im; Benoît Roux
Journal:  J Mol Biol       Date:  2002-09-27       Impact factor: 5.469

9.  Anomalous mole fraction effect, electrostatics, and binding in ionic channels.

Authors:  W Nonner; D P Chen; B Eisenberg
Journal:  Biophys J       Date:  1998-05       Impact factor: 4.033

10.  Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution.

Authors:  Wonpil Im; Benoît Roux
Journal:  J Mol Biol       Date:  2002-06-21       Impact factor: 5.469

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  26 in total

1.  Energy variational analysis of ions in water and channels: Field theory for primitive models of complex ionic fluids.

Authors:  Bob Eisenberg; Yunkyong Hyon; Chun Liu
Journal:  J Chem Phys       Date:  2010-09-14       Impact factor: 3.488

2.  Sieving experiments and pore diameter: it's not a simple relationship.

Authors:  Daniel Krauss; Dirk Gillespie
Journal:  Eur Biophys J       Date:  2010-05-11       Impact factor: 1.733

3.  Chemical modification of the bacterial porin OmpF: gain of selectivity by volume reduction.

Authors:  Maarten Vrouenraets; Jenny Wierenga; Wim Meijberg; Henk Miedema
Journal:  Biophys J       Date:  2005-11-18       Impact factor: 4.033

4.  Channel activity of OmpF monitored in nano-BLMs.

Authors:  Eva K Schmitt; Maarten Vrouenraets; Claudia Steinem
Journal:  Biophys J       Date:  2006-06-16       Impact factor: 4.033

5.  Conductance and selectivity fluctuations in D127 mutants of the bacterial porin OmpF.

Authors:  Henk Miedema; Maarten Vrouenraets; Jenny Wierenga; Bob Eisenberg; Tilman Schirmer; Arnaud Baslé; Wim Meijberg
Journal:  Eur Biophys J       Date:  2006-07-21       Impact factor: 1.733

6.  Steric selectivity in Na channels arising from protein polarization and mobile side chains.

Authors:  Dezso Boda; Wolfgang Nonner; Mónika Valiskó; Douglas Henderson; Bob Eisenberg; Dirk Gillespie
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

7.  Ions and inhibitors in the binding site of HIV protease: comparison of Monte Carlo simulations and the linearized Poisson-Boltzmann theory.

Authors:  Dezso Boda; Mónika Valiskó; Douglas Henderson; Dirk Gillespie; Bob Eisenberg; Michael K Gilson
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

8.  Engineering channels: atomic biology.

Authors:  Bob Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-28       Impact factor: 11.205

9.  The anomalous mole fraction effect in calcium channels: a measure of preferential selectivity.

Authors:  Dirk Gillespie; Dezso Boda
Journal:  Biophys J       Date:  2008-05-30       Impact factor: 4.033

10.  Understanding ion conductance on a molecular level: an all-atom modeling of the bacterial porin OmpF.

Authors:  Soroosh Pezeshki; Catalin Chimerel; Andrey N Bessonov; Mathias Winterhalter; Ulrich Kleinekathöfer
Journal:  Biophys J       Date:  2009-10-07       Impact factor: 4.033

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