Literature DB >> 14599212

Eutectic phase polymerization of activated ribonucleotide mixtures yields quasi-equimolar incorporation of purine and pyrimidine nucleobases.

Pierre-Alain Monnard1, Anastassia Kanavarioti, David W Deamer.   

Abstract

The RNA world hypothesis requires a plausible mechanism by which RNA itself (or precursor RNA-like polymers) can be synthesized nonenzymatically from the corresponding building blocks. Simulation experiments have exploited chemically reactive mononucleotides as monomers. Solutions of such monomers in the prebiotic environment were likely to be very dilute, but in experimental simulations of polymerization reactions dilute solutions of activated mononucleotides in the millimolar range hydrolyze extensively, and only trace amounts of dimers and trimers are formed. We report here that random medium-size RNA analogues with mixed sequences (5- to 17-mers with traces of longer products) can be synthesized in ice eutectic phases that are produced when dilute solutions of activated monomers and catalysts (Mg(II) and Pb(II)) are frozen and maintained at -18 degrees C for periods up to 38 days. Under these conditions, the monomers are concentrated as eutectics in an ice matrix. Hydrolysis of the activated mononucleotides was suppressed at low-temperature ranges, and polymerization was enhanced with yields up to 90%. Analysis of the mixed oligomers established that incorporation of both purine and pyrimidine bases proceeded at comparable rates and yields. These results suggest that ice deposits on the early Earth could have facilitated the synthesis of short- and medium-size random sequence RNA analogues and thereby provided a microenvironment suitable for the formation of biopolymers or their precursors.

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Year:  2003        PMID: 14599212     DOI: 10.1021/ja036465h

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  50 in total

1.  Ligation activity of fragmented ribozymes in frozen solution: implications for the RNA world.

Authors:  Alexander V Vlassov; Brian H Johnston; Laura F Landweber; Sergei A Kazakov
Journal:  Nucleic Acids Res       Date:  2004-05-25       Impact factor: 16.971

Review 2.  The origins of the RNA world.

Authors:  Michael P Robertson; Gerald F Joyce
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-05-01       Impact factor: 10.005

Review 3.  Getting past the RNA world: the initial Darwinian ancestor.

Authors:  Michael Yarus
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-04-01       Impact factor: 10.005

Review 4.  Closing the circle: replicating RNA with RNA.

Authors:  Leslie K L Cheng; Peter J Unrau
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-16       Impact factor: 10.005

5.  New ligase-derived RNA polymerase ribozymes.

Authors:  Michael S Lawrence; David P Bartel
Journal:  RNA       Date:  2005-06-29       Impact factor: 4.942

Review 6.  The RNA world on ice: a new scenario for the emergence of RNA information.

Authors:  Alexander V Vlassov; Sergei A Kazakov; Brian H Johnston; Laura F Landweber
Journal:  J Mol Evol       Date:  2005-07-13       Impact factor: 2.395

7.  Question 5: does the RNA-world still retain its appeal after 40 years of research?

Authors:  Pierre-Alain Monnard
Journal:  Orig Life Evol Biosph       Date:  2007-07-05       Impact factor: 1.950

8.  Mutations and lethality in simulated prebiotic networks.

Authors:  Aron Inger; Ariel Solomon; Barak Shenhav; Tsviya Olender; Doron Lancet
Journal:  J Mol Evol       Date:  2009-09-29       Impact factor: 2.395

9.  Conversion of stable RNA hairpin to a metastable dimer in frozen solution.

Authors:  Xueguang Sun; J Michael Li; Roger M Wartell
Journal:  RNA       Date:  2007-10-09       Impact factor: 4.942

Review 10.  The RNA World: molecular cooperation at the origins of life.

Authors:  Paul G Higgs; Niles Lehman
Journal:  Nat Rev Genet       Date:  2014-11-11       Impact factor: 53.242

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