Literature DB >> 15987804

New ligase-derived RNA polymerase ribozymes.

Michael S Lawrence1, David P Bartel.   

Abstract

The search is underway for a catalytic RNA molecule capable of self-replication. Finding such a ribozyme would lend crucial support to the RNA World hypothesis, which holds that very early life-forms relied on RNA for both replicating and storing genetic information. We previously reported an RNA polymerase isolated from a pool of variants of an existing RNA ligase ribozyme. Here we report eight additional ligase-derived polymerase ribozymes isolated from this pool. Because each of them is a new potential starting point for further in vitro evolution and engineering, together they substantially enrich the set of candidates from which an RNA replicase ribozyme might eventually emerge.

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Year:  2005        PMID: 15987804      PMCID: PMC1370801          DOI: 10.1261/rna.2110905

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  43 in total

1.  A replicator was not involved in the origin of life.

Authors:  R Shapiro
Journal:  IUBMB Life       Date:  2000-03       Impact factor: 3.885

2.  RNA-catalyzed RNA polymerization: accurate and general RNA-templated primer extension.

Authors:  W K Johnston; P J Unrau; M S Lawrence; M E Glasner; D P Bartel
Journal:  Science       Date:  2001-05-18       Impact factor: 47.728

3.  Continuous in vitro evolution of a ribozyme that catalyzes three successive nucleotidyl addition reactions.

Authors:  Kathleen E McGinness; Martin C Wright; Gerald F Joyce
Journal:  Chem Biol       Date:  2002-05

Review 4.  The antiquity of RNA-based evolution.

Authors:  Gerald F Joyce
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

Review 5.  In search of an RNA replicase ribozyme.

Authors:  Kathleen E McGinness; Gerald F Joyce
Journal:  Chem Biol       Date:  2003-01

6.  RNA-catalysed synthesis of complementary-strand RNA.

Authors:  J A Doudna; J W Szostak
Journal:  Nature       Date:  1989-06-15       Impact factor: 49.962

Review 7.  Nobel lecture. Self-splicing and enzymatic activity of an intervening sequence RNA from Tetrahymena.

Authors:  T R Cech
Journal:  Biosci Rep       Date:  1990-06       Impact factor: 3.840

8.  Kinetic framework for ligation by an efficient RNA ligase ribozyme.

Authors:  N H Bergman; W K Johnston; D P Bartel
Journal:  Biochemistry       Date:  2000-03-21       Impact factor: 3.162

9.  RNA-catalyzed RNA ligation on an external RNA template.

Authors:  Kathleen E McGinness; Gerald F Joyce
Journal:  Chem Biol       Date:  2002-03

10.  Prebiotic ribose synthesis: a critical analysis.

Authors:  R Shapiro
Journal:  Orig Life Evol Biosph       Date:  1988       Impact factor: 1.950

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  20 in total

1.  Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme.

Authors:  Eric J Hayden; Evandro Ferrada; Andreas Wagner
Journal:  Nature       Date:  2011-06-02       Impact factor: 49.962

2.  Crystal structure of an RNA polymerase ribozyme in complex with an antibody fragment.

Authors:  Joseph A Piccirilli; Yelena Koldobskaya
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

Review 3.  Evolutionary dynamics of RNA-like replicator systems: A bioinformatic approach to the origin of life.

Authors:  Nobuto Takeuchi; Paulien Hogeweg
Journal:  Phys Life Rev       Date:  2012-06-13       Impact factor: 11.025

4.  Selection of an improved RNA polymerase ribozyme with superior extension and fidelity.

Authors:  Hani S Zaher; Peter J Unrau
Journal:  RNA       Date:  2007-07       Impact factor: 4.942

5.  Improved polymerase ribozyme efficiency on hydrophobic assemblies.

Authors:  Ulrich F Müller; David P Bartel
Journal:  RNA       Date:  2008-01-29       Impact factor: 4.942

6.  Polymerase ribozyme efficiency increased by G/T-rich DNA oligonucleotides.

Authors:  Chengguo Yao; Ulrich F Müller
Journal:  RNA       Date:  2011-05-27       Impact factor: 4.942

7.  Influence of montmorillonite on nucleotide oligomerization reactions: a molecular dynamics study.

Authors:  Damien C Mathew; Zaida Luthey-Schulten
Journal:  Orig Life Evol Biosph       Date:  2010-03-07       Impact factor: 1.950

8.  Characterization of the B6.61 polymerase ribozyme accessory domain.

Authors:  Qing S Wang; Leslie K L Cheng; Peter J Unrau
Journal:  RNA       Date:  2011-01-11       Impact factor: 4.942

9.  Crystal structure of the catalytic core of an RNA-polymerase ribozyme.

Authors:  David M Shechner; Robert A Grant; Sarah C Bagby; Yelena Koldobskaya; Joseph A Piccirilli; David P Bartel
Journal:  Science       Date:  2009-11-27       Impact factor: 47.728

10.  Multilevel selection in models of prebiotic evolution II: a direct comparison of compartmentalization and spatial self-organization.

Authors:  Nobuto Takeuchi; Paulien Hogeweg
Journal:  PLoS Comput Biol       Date:  2009-10-16       Impact factor: 4.475

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