Literature DB >> 9746340

Recommendations for the presentation of NMR structures of proteins and nucleic acids--IUPAC-IUBMB-IUPAB Inter-Union Task Group on the standardization of data bases of protein and nucleic acid structures determined by NMR spectroscopy.

J L Markley1, A Bax, Y Arata, C W Hilbers, R Kaptein, B D Sykes, P E Wright, K Wüthrich.   

Abstract

The recommendations presented here are designed to support easier communication of NMR data and NMR structures of proteins and nucleic acids through unified nomenclature and reporting standards. Much of this document pertains to the reporting of data in journal articles; however, in the interest of the future development of structural biology, it is desirable that the bulk of the reported information be stored in computer-accessible form and be freely accessible to the scientific community in standardized formats for data exchange. These recommendations stem from an IUPAC-IUBMB-IUPAB inter-union venture with the direct involvement of ICSU and CODATA. The Task Group has reviewed previous formal recommendations and has extended them in the light of more recent developments in the field of biomolecular NMR spectroscopy. Drafts of the recommendations presented here have been examined critically by more than 50 specialists in the field and have gone through two rounds of extensive modification to incorporate suggestions and criticisms.

Mesh:

Substances:

Year:  1998        PMID: 9746340     DOI: 10.1046/j.1432-1327.1998.2560001.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  67 in total

1.  Solution structure of Phrixotoxin 1, a specific peptide inhibitor of Kv4 potassium channels from the venom of the theraphosid spider Phrixotrichus auratus.

Authors:  Benjamin Chagot; Pierre Escoubas; Elba Villegas; Cédric Bernard; Gilles Ferrat; Gerardo Corzo; Michel Lazdunski; Hervé Darbon
Journal:  Protein Sci       Date:  2004-05       Impact factor: 6.725

2.  pK(a) values for side-chain carboxyl groups of a PGB1 variant explain salt and pH-dependent stability.

Authors:  Stina Lindman; Sara Linse; Frans A A Mulder; Ingemar André
Journal:  Biophys J       Date:  2006-10-13       Impact factor: 4.033

3.  Resolution enhancement by homonuclear J-decoupling: application to three-dimensional solid-state magic angle spinning NMR spectroscopy.

Authors:  Lichi Shi; Xiaohu Peng; Mumdooh A M Ahmed; Dale Edwards; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Biomol NMR       Date:  2008-04-11       Impact factor: 2.835

4.  NMR studies of the dynamics of nitrophorin 2 bound to nitric oxide.

Authors:  Dhanasekaran Muthu; Robert E Berry; Hongjun Zhang; F Ann Walker
Journal:  Biochemistry       Date:  2013-10-30       Impact factor: 3.162

5.  Imino proton NMR analysis of HDV ribozymes: nested double pseudoknot structure and Mg2+ ion-binding site close to the catalytic core in solution.

Authors:  Yoichiro Tanaka; Tamaki Hori; Mitsuhiro Tagaya; Taiichi Sakamoto; Yasuyuki Kurihara; Masato Katahira; Seiichi Uesugi
Journal:  Nucleic Acids Res       Date:  2002-02-01       Impact factor: 16.971

6.  Protein structure calculation with data imputation: the use of substitute restraints.

Authors:  Carolina Cano; Konrad Brunner; Kumaran Baskaran; Ralph Elsner; Claudia E Munte; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2009-10-17       Impact factor: 2.835

7.  Solid state NMR sequential resonance assignments and conformational analysis of the 2x10.4 kDa dimeric form of the Bacillus subtilis protein Crh.

Authors:  Anja Böckmann; Adam Lange; Anne Galinier; Sorin Luca; Nicolas Giraud; Michel Juy; Henrike Heise; Roland Montserret; François Penin; Marc Baldus
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

8.  Monomeric solution structure of the prototypical 'C' chemokine lymphotactin.

Authors:  E S Kuloglu; D R McCaslin; M Kitabwalla; C D Pauza; J L Markley; B F Volkman
Journal:  Biochemistry       Date:  2001-10-23       Impact factor: 3.162

9.  Efficient production of isotopically labeled proteins by cell-free synthesis: a practical protocol.

Authors:  Takuya Torizawa; Masato Shimizu; Masato Taoka; Hiroshi Miyano; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

10.  Associating a negatively charged GdDOTA-derivative to the Pittsburgh compound B for targeting Aβ amyloid aggregates.

Authors:  André F Martins; Alexandre C Oliveira; Jean-François Morfin; Douglas V Laurents; Éva Tóth; Carlos F G C Geraldes
Journal:  J Biol Inorg Chem       Date:  2015-11-27       Impact factor: 3.358

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.