Literature DB >> 19953303

High resolution NMR spectroscopy of nanocrystalline proteins at ultra-high magnetic field.

Lindsay J Sperling1, Andrew J Nieuwkoop, Andrew S Lipton, Deborah A Berthold, Chad M Rienstra.   

Abstract

Magic-angle spinning (MAS) solid-state NMR (SSNMR) spectroscopy of uniformly-(13)C,(15)N labeled protein samples provides insight into atomic-resolution chemistry and structure. Data collection efficiency has advanced remarkably in the last decade; however, the study of larger proteins is still challenged by relatively low resolution in comparison to solution NMR. In this study, we present a systematic analysis of SSNMR protein spectra acquired at 11.7, 17.6 and 21.1 Tesla ((1)H frequencies of 500, 750, and 900 MHz). For two protein systems--GB1, a 6 kDa nanocrystalline protein and DsbA, a 21 kDa nanocrystalline protein--line narrowing is demonstrated in all spectral regions with increasing field. Resolution enhancement is greatest in the aliphatic region, including methine, methylene and methyl sites. The resolution for GB1 increases markedly as a function of field, and for DsbA, resolution in the C-C region increases by 42%, according to the number of peaks that can be uniquely picked and integrated in the 900 MHz spectra when compared to the 500 MHz spectra. Additionally, chemical exchange is uniquely observed in the highest field spectra for at least two isoleucine C delta 1 sites in DsbA. These results further illustrate the benefits of high-field MAS SSNMR spectroscopy for protein structural studies.

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Year:  2009        PMID: 19953303      PMCID: PMC2860797          DOI: 10.1007/s10858-009-9389-9

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  27 in total

1.  Selective and extensive 13C labeling of a membrane protein for solid-state NMR investigations.

Authors:  M Hong; K Jakes
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

2.  Using a cross-coil to reduce RF heating by an order of magnitude in triple-resonance multinuclear MAS at high fields.

Authors:  F David Doty; Jatin Kulkarni; Christopher Turner; George Entzminger; Anthony Bielecki
Journal:  J Magn Reson       Date:  2006-07-24       Impact factor: 2.229

3.  Partial (13)C and (15)N chemical-shift assignments of the disulfide-bond-forming enzyme DsbB by 3D magic-angle spinning NMR spectroscopy.

Authors:  Ying Li; Deborah A Berthold; Heather L Frericks; Robert B Gennis; Chad M Rienstra
Journal:  Chembiochem       Date:  2007-03-05       Impact factor: 3.164

4.  Structure of reduced DsbA from Escherichia coli in solution.

Authors:  H J Schirra; C Renner; M Czisch; M Huber-Wunderlich; T A Holak; R Glockshuber
Journal:  Biochemistry       Date:  1998-05-05       Impact factor: 3.162

5.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

6.  Magic-angle spinning solid-state NMR spectroscopy of the beta1 immunoglobulin binding domain of protein G (GB1): 15N and 13C chemical shift assignments and conformational analysis.

Authors:  W Trent Franks; Donghua H Zhou; Benjamin J Wylie; Brian G Money; Daniel T Graesser; Heather L Frericks; Gurmukh Sahota; Chad M Rienstra
Journal:  J Am Chem Soc       Date:  2005-09-07       Impact factor: 15.419

7.  Crystal structure of the DsbA protein required for disulphide bond formation in vivo.

Authors:  J L Martin; J C Bardwell; J Kuriyan
Journal:  Nature       Date:  1993-09-30       Impact factor: 49.962

8.  Reduction of RF-induced sample heating with a scroll coil resonator structure for solid-state NMR probes.

Authors:  John A Stringer; Charles E Bronnimann; Charles G Mullen; Donghua H Zhou; Sara A Stellfox; Ying Li; Evan H Williams; Chad M Rienstra
Journal:  J Magn Reson       Date:  2005-03       Impact factor: 2.229

9.  Crystal structures of reduced and oxidized DsbA: investigation of domain motion and thiolate stabilization.

Authors:  L W Guddat; J C Bardwell; J L Martin
Journal:  Structure       Date:  1998-06-15       Impact factor: 5.006

10.  The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data.

Authors:  D S Wishart; B D Sykes
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

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  6 in total

1.  Sensitive (13)C- (13)C correlation spectra of amyloid fibrils at very high spinning frequencies and magnetic fields.

Authors:  Markus Weingarth; Yuichi Masuda; K Takegoshi; Geoffrey Bodenhausen; Piotr Tekely
Journal:  J Biomol NMR       Date:  2011-03-29       Impact factor: 2.835

2.  Structured regions of α-synuclein fibrils include the early-onset Parkinson's disease mutation sites.

Authors:  Gemma Comellas; Luisel R Lemkau; Andrew J Nieuwkoop; Kathryn D Kloepper; Daniel T Ladror; Reika Ebisu; Wendy S Woods; Andrew S Lipton; Julia M George; Chad M Rienstra
Journal:  J Mol Biol       Date:  2011-06-21       Impact factor: 5.469

3.  3D MAS NMR Experiment Utilizing Through-Space 15N-15N Correlations.

Authors:  Kevin J Donovan; Robert Silvers; Sara Linse; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2017-05-03       Impact factor: 15.419

4.  Conformational disorder of membrane peptides investigated from solid-state NMR line widths and line shapes.

Authors:  Yongchao Su; Mei Hong
Journal:  J Phys Chem B       Date:  2011-08-18       Impact factor: 2.991

5.  Structural characterization of supramolecular assemblies by ¹³C spin dilution and 3D solid-state NMR.

Authors:  Birgit Habenstein; Antoine Loquet; Karin Giller; Stefan Becker; Adam Lange
Journal:  J Biomol NMR       Date:  2012-12-01       Impact factor: 2.835

Review 6.  NMR of Macromolecular Assemblies and Machines at 1 GHz and Beyond: New Transformative Opportunities for Molecular Structural Biology.

Authors:  Caitlin M Quinn; Mingzhang Wang; Tatyana Polenova
Journal:  Methods Mol Biol       Date:  2018
  6 in total

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