Literature DB >> 15754053

Probing membrane protein orientation and structure using fast magic-angle-spinning solid-state NMR.

O C Andronesi1, J R Pfeifer, L Al-Momani, S Ozdirekcan, D T S Rijkers, B Angerstein, S Luca, U Koert, J A Killian, M Baldus.   

Abstract

One and two-dimensional solid-state NMR experiments are discussed that permit probing local structure and overall molecular conformation of membrane-embedded polypeptides under Magic Angle Spinning. The functional dependence of a series of anisotropic recoupling schemes is analyzed using theoretical and numerical methods. These studies lead to the construction of a set of polarization dephasing or transfer units that probe local backbone conformation and overall molecular orientation within the same NMR experiment. Experimental results are shown for a randomly oriented peptide and for two model membrane-peptides reconstituted into lipid bilayers and oriented on polymer films according to a method proposed by Bechinger et al.

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Year:  2004        PMID: 15754053     DOI: 10.1007/s10858-004-3452-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  40 in total

1.  Solid-state NMR studies of the structure and mechanisms of proteins.

Authors:  Lynmarie K Thompson
Journal:  Curr Opin Struct Biol       Date:  2002-10       Impact factor: 6.809

2.  Dipolar waves map the structure and topology of helices in membrane proteins.

Authors:  Michael F Mesleh; Sangwon Lee; Gianluigi Veglia; David S Thiriot; Francesca M Marassi; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2003-07-23       Impact factor: 15.419

3.  High-resolution conformation of gramicidin A in a lipid bilayer by solid-state NMR.

Authors:  R R Ketchem; W Hu; T A Cross
Journal:  Science       Date:  1993-09-10       Impact factor: 47.728

Review 4.  Dipolar recoupling in MAS spectra of biological solids.

Authors:  R G Griffin
Journal:  Nat Struct Biol       Date:  1998-07

5.  High-resolution polypeptide structure in a lamellar phase lipid environment from solid state NMR derived orientational constraints.

Authors:  R Ketchem; B Roux; T Cross
Journal:  Structure       Date:  1997-12-15       Impact factor: 5.006

Review 6.  High-resolution NMR of biological solids.

Authors:  L M McDowell; J Schaefer
Journal:  Curr Opin Struct Biol       Date:  1996-10       Impact factor: 6.809

Review 7.  Magic angle spinning NMR spectroscopy of membrane proteins.

Authors:  S O Smith; K Aschheim; M Groesbeek
Journal:  Q Rev Biophys       Date:  1996-12       Impact factor: 5.318

8.  Inter- and intramolecular distance measurements by solid-state MAS NMR: determination of gramicidin A channel dimer structure in hydrated phospholipid bilayers.

Authors:  R Fu; M Cotten; T A Cross
Journal:  J Biomol NMR       Date:  2000-03       Impact factor: 2.835

9.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

10.  Tryptophan dynamics and structural refinement in a lipid bilayer environment: solid state NMR of the gramicidin channel.

Authors:  W Hu; N D Lazo; T A Cross
Journal:  Biochemistry       Date:  1995-10-31       Impact factor: 3.162

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  9 in total

1.  Peptide model helices in lipid membranes: insertion, positioning, and lipid response on aggregation studied by X-ray scattering.

Authors:  Philipp E Schneggenburger; André Beerlink; Britta Weinhausen; Tim Salditt; Ulf Diederichsen
Journal:  Eur Biophys J       Date:  2010-12-23       Impact factor: 1.733

2.  Positioning of proteins in membranes: a computational approach.

Authors:  Andrei L Lomize; Irina D Pogozheva; Mikhail A Lomize; Henry I Mosberg
Journal:  Protein Sci       Date:  2006-06       Impact factor: 6.725

Review 3.  Magnetic resonance in the solid state: applications to protein folding, amyloid fibrils and membrane proteins.

Authors:  Marc Baldus
Journal:  Eur Biophys J       Date:  2007-05-31       Impact factor: 1.733

Review 4.  Orientation and dynamics of transmembrane peptides: the power of simple models.

Authors:  Andrea Holt; J Antoinette Killian
Journal:  Eur Biophys J       Date:  2009-12-18       Impact factor: 1.733

5.  Determination of relative tensor orientations by γ-encoded chemical shift anisotropy/heteronuclear dipolar coupling 3D NMR spectroscopy in biological solids.

Authors:  Guangjin Hou; Sivakumar Paramasivam; In-Ja L Byeon; Angela M Gronenborn; Tatyana Polenova
Journal:  Phys Chem Chem Phys       Date:  2010-10-08       Impact factor: 3.676

6.  1H-13C/1H-15N heteronuclear dipolar recoupling by R-symmetry sequences under fast magic angle spinning for dynamics analysis of biological and organic solids.

Authors:  Guangjin Hou; In-Ja L Byeon; Jinwoo Ahn; Angela M Gronenborn; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2011-10-28       Impact factor: 15.419

Review 7.  On the role of NMR spectroscopy for characterization of antimicrobial peptides.

Authors:  Fernando Porcelli; Ayyalusamy Ramamoorthy; George Barany; Gianluigi Veglia
Journal:  Methods Mol Biol       Date:  2013

Review 8.  Determining the orientation and localization of membrane-bound peptides.

Authors:  Walter Hohlweg; Simone Kosol; Klaus Zangger
Journal:  Curr Protein Pept Sci       Date:  2012-05       Impact factor: 3.272

9.  High-resolution 3D structure determination of kaliotoxin by solid-state NMR spectroscopy.

Authors:  Jegannath Korukottu; Robert Schneider; Vinesh Vijayan; Adam Lange; Olaf Pongs; Stefan Becker; Marc Baldus; Markus Zweckstetter
Journal:  PLoS One       Date:  2008-06-04       Impact factor: 3.240

  9 in total

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