Literature DB >> 12565042

Backbone and side chain assignment strategies for multiply labeled membrane peptides and proteins in the solid state.

Aneta T Petkova1, Marc Baldus, Marina Belenky, Mei Hong, Robert G Griffin, Judith Herzfeld.   

Abstract

We demonstrate that the SPECIFIC CP technique can be used to obtain heteronuclear correlation (HETCOR) spectra of peptide backbones with greater efficiency than conventional HETCOR methods. We show that similar design principles can be employed to achieve selective homonuclear polarization transfer mediated through dipolar or scalar couplings. Both approaches are demonstrated in a tripeptide with uniform 15N and 13C labeling, and with uniform 15N labeling and natural abundance 13C. In other applications, the high efficiency of the heteronuclear SPECIFIC CP transfer allows discrimination of single amide signals in the 248-residue membrane protein bacteriorhodopsin (bR). In particular, variations are detected in the ordering of the Ala81-Arg82 peptide bond among the photocycle intermediates of bR and SPECIFIC CP is used to correlate 15N and 13C signals from the three Val-Pro peptide bonds.

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Year:  2003        PMID: 12565042     DOI: 10.1016/s1090-7807(02)00137-4

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  20 in total

Review 1.  Structure determination of membrane proteins by NMR spectroscopy.

Authors:  Stanley J Opella; Francesca M Marassi
Journal:  Chem Rev       Date:  2004-08       Impact factor: 60.622

2.  SedNMR: a web tool for optimizing sedimentation of macromolecular solutes for SSNMR.

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Journal:  J Biomol NMR       Date:  2013-11-17       Impact factor: 2.835

3.  Heteronuclear proton assisted recoupling.

Authors:  Gaël De Paëpe; Józef R Lewandowski; Antoine Loquet; Matt Eddy; Simon Megy; Anja Böckmann; Robert G Griffin
Journal:  J Chem Phys       Date:  2011-03-07       Impact factor: 3.488

4.  3D MAS NMR Experiment Utilizing Through-Space 15N-15N Correlations.

Authors:  Kevin J Donovan; Robert Silvers; Sara Linse; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2017-05-03       Impact factor: 15.419

5.  Structure determination of a membrane protein in proteoliposomes.

Authors:  Bibhuti B Das; Henry J Nothnagel; George J Lu; Woo Sung Son; Ye Tian; Francesca M Marassi; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2012-01-23       Impact factor: 15.419

6.  A Monte Carlo/simulated annealing algorithm for sequential resonance assignment in solid state NMR of uniformly labeled proteins with magic-angle spinning.

Authors:  Robert Tycko; Kan-Nian Hu
Journal:  J Magn Reson       Date:  2010-05-25       Impact factor: 2.229

7.  A general Monte Carlo/simulated annealing algorithm for resonance assignment in NMR of uniformly labeled biopolymers.

Authors:  Kan-Nian Hu; Wei Qiang; Robert Tycko
Journal:  J Biomol NMR       Date:  2011-06-28       Impact factor: 2.835

8.  Solid state NMR sequential resonance assignments and conformational analysis of the 2x10.4 kDa dimeric form of the Bacillus subtilis protein Crh.

Authors:  Anja Böckmann; Adam Lange; Anne Galinier; Sorin Luca; Nicolas Giraud; Michel Juy; Henrike Heise; Roland Montserret; François Penin; Marc Baldus
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

9.  Experiments optimized for magic angle spinning and oriented sample solid-state NMR of proteins.

Authors:  Bibhuti B Das; Eugene C Lin; Stanley J Opella
Journal:  J Phys Chem B       Date:  2013-10-07       Impact factor: 2.991

10.  Signal assignments and chemical-shift structural analysis of uniformly 13C, 15N-labeled peptide, mastoparan-X, by multidimensional solid-state NMR under magic-angle spinning.

Authors:  Toshimichi Fujiwara; Yasuto Todokoro; Hajime Yanagishita; Midori Tawarayama; Toshiyuki Kohno; Kaori Wakamatsu; Hideo Akutsu
Journal:  J Biomol NMR       Date:  2004-04       Impact factor: 2.835

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