Literature DB >> 2317545

Inhomogeneous broadening in spectral bands of carbonmonoxymyoglobin. The connection between spectral and functional heterogeneity.

P Ormos1, A Ansari, D Braunstein, B R Cowen, H Frauenfelder, M K Hong, I E Iben, T B Sauke, P J Steinbach, R D Young.   

Abstract

The rebinding kinetics of CO to myoglobin after flash photolysis is nonexponential in time below approximately 180 K; the kinetics is governed by a distribution of enthalpic barriers. This distribution results from inhomogeneities in the protein conformation, referred to as conformational substates. Hole-burning experiments on the Soret and IR CO-stretch bands test the assumption that an inhomogeneous distribution of conformational substates results in inhomogeneously broadened spectra. CO was slowly photolyzed at different wavelengths in the Soret band at 10 K. Both the Soret band and the CO-stretch band A1, centered at 1,945 cm-1, shift during photolysis, demonstrating that different wavelengths excite different parts of the distributed population. We have also done kinetic hole-burning experiments by measuring peak shifts in the Soret and A1 bands as the CO molecules rebind. The shifts indicate that the spectral and enthalpic distributions are correlated. In the A1 band, the spectral and enthalpic distributions are highly correlated while in the Soret the correlation is weak. From the peak shifts in the spectral and kinetic hole-burning experiments the inhomogeneous broadening is estimated to be approximately 15% of the total width in the Soret band and approximately 60% in A1. We have previously measured the tilt angle alpha between the bound CO and the heme normal (Ormos, P., D. Braunstein, H. Frauenfelder, M. K. Hong, S.-L. Lin, T. B. Sauke, and R. D. Young. 1988. Proc. Natl. Acad. Sci. USA. 85:8492-8496) and observed a wave number dependence of the tilt angles within the CO-stretch A bands. Thus the spectral and enthalpic distributions of the A bands are coupled to a heterogeneity of the structure.

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Year:  1990        PMID: 2317545      PMCID: PMC1280661          DOI: 10.1016/S0006-3495(90)82522-4

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  19 in total

1.  Glassy behavior of a protein.

Authors: 
Journal:  Phys Rev Lett       Date:  1989-04-17       Impact factor: 9.161

2.  Spectral broadening in biomolecules.

Authors: 
Journal:  Phys Rev Lett       Date:  1986-09-08       Impact factor: 9.161

3.  Orientation of carbon monoxide and structure-function relationship in carbonmonoxymyoglobin.

Authors:  P Ormos; D Braunstein; H Frauenfelder; M K Hong; S L Lin; T B Sauke; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1988-11       Impact factor: 11.205

4.  Linkage of functional and structural heterogeneity in proteins: dynamic hole burning in carboxymyoglobin.

Authors:  B F Campbell; M R Chance; J M Friedman
Journal:  Science       Date:  1987-10-16       Impact factor: 47.728

5.  Temperature-dependent X-ray diffraction as a probe of protein structural dynamics.

Authors:  H Frauenfelder; G A Petsko; D Tsernoglou
Journal:  Nature       Date:  1979-08-16       Impact factor: 49.962

6.  Protein states and proteinquakes.

Authors:  A Ansari; J Berendzen; S F Bowne; H Frauenfelder; I E Iben; T B Sauke; E Shyamsunder; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

7.  Differences in the infrared stretching frequency of carbon monoxide bound to abnormal hemoglobins.

Authors:  W S Coughey; J O Alben; S McCoy; S H Boyer; S Charache; P Hathaway
Journal:  Biochemistry       Date:  1969-01       Impact factor: 3.162

Review 8.  Fluctuations in protein structure from X-ray diffraction.

Authors:  G A Petsko; D Ringe
Journal:  Annu Rev Biophys Bioeng       Date:  1984

9.  Conformational fluctuation and change in biological macromolecules.

Authors:  A Cooper
Journal:  Sci Prog       Date:  1980       Impact factor: 2.774

10.  Rebinding and relaxation in the myoglobin pocket.

Authors:  A Ansari; J Berendzen; D Braunstein; B R Cowen; H Frauenfelder; M K Hong; I E Iben; J B Johnson; P Ormos; T B Sauke
Journal:  Biophys Chem       Date:  1987-05-09       Impact factor: 2.352

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  26 in total

1.  Kinetic evidence for three photolyzable taxonomic conformational substates in oxymyoglobin.

Authors:  Catherine Tetreau; Eugene Novikov; Martine Tourbez; Daniel Lavalette
Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

2.  Conformational substates in azurin.

Authors:  D Ehrenstein; G U Nienhaus
Journal:  Proc Natl Acad Sci U S A       Date:  1992-10-15       Impact factor: 11.205

3.  Protein dynamics. Vibrational coupling, spectral broadening mechanisms, and anharmonicity effects in carbonmonoxy heme proteins studied by the temperature dependence of the Soret band lineshape.

Authors:  A Di Pace; A Cupane; M Leone; E Vitrano; L Cordone
Journal:  Biophys J       Date:  1992-08       Impact factor: 4.033

4.  Protein dynamics and 1/f noise.

Authors:  T G Dewey; J G Bann
Journal:  Biophys J       Date:  1992-08       Impact factor: 4.033

5.  Vibronic energy map and excited state vibrational characteristics of magnesium myoglobin determined by energy-selective fluorescence.

Authors:  A D Kaposi; J M Vanderkooi
Journal:  Proc Natl Acad Sci U S A       Date:  1992-12-01       Impact factor: 11.205

6.  Different relaxations in myoglobin after photolysis.

Authors:  Matteo Levantino; Antonio Cupane; László Zimányi; Pál Ormos
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-22       Impact factor: 11.205

7.  Bacteriorhodopsin photocycle at cryogenic temperatures reveals distributed barriers of conformational substates.

Authors:  Andrei K Dioumaev; Janos K Lanyi
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-29       Impact factor: 11.205

8.  Dynamic fluctuation of proteins watched in real time.

Authors:  Pál Ormos
Journal:  HFSP J       Date:  2008-10-16

9.  pH-induced conformational changes of the Fe(2+)-N epsilon (His F8) linkage in deoxyhemoglobin trout IV detected by the Raman active Fe(2+)-N epsilon (His F8) stretching mode.

Authors:  M Bosenbeck; R Schweitzer-Stenner; W Dreybrodt
Journal:  Biophys J       Date:  1992-01       Impact factor: 4.033

10.  Charge density-dependent modifications of hydration shell waters by Hofmeister ions.

Authors:  Feng Guo; Joel M Friedman
Journal:  J Am Chem Soc       Date:  2009-08-12       Impact factor: 15.419

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