Literature DB >> 1310539

Enzymatic catalysis and dynamics in low-water environments.

R Affleck1, Z F Xu, V Suzawa, K Focht, D S Clark, J S Dordick.   

Abstract

Enzymes suspended in organic solvents represent a versatile system for studying the involvement of water in enzyme structure and function. Addition of less than 1% (vol/vol) water to tetrahydrofuran containing 1 M 1-propanol leads to a substantial increase in the transesterification activity of subtilisin Carlsberg (from Bacillus licheniformis) that correlates with a sharp increase in the active-site polarity and a 90% decrease in the rotational correlation time (i.e., increase in mobility) of a nitroxide spin label within the active site. Water in excess of 1% has little additional effect on active-site polarity and coincides with a further increase in spin-label mobility, yet the transesterification activity decreases dramatically. Thus, transesterification activity increases and then decreases with increasing enzyme hydration and flexibility (which are presumably coupled through dielectric screening), suggesting that the conformation of partially hydrated subtilisin is different from that of the nearly dry enzyme--i.e., enzyme containing less than 9% (wt/wt) water.

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Year:  1992        PMID: 1310539      PMCID: PMC48393          DOI: 10.1073/pnas.89.3.1100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  10 in total

1.  Proton percolation on hydrated lysozyme powders.

Authors:  G Careri; A Giansanti; J A Rupley
Journal:  Proc Natl Acad Sci U S A       Date:  1986-09       Impact factor: 11.205

2.  Enzymatic catalysis in nonaqueous solvents.

Authors:  A Zaks; A M Klibanov
Journal:  J Biol Chem       Date:  1988-03-05       Impact factor: 5.157

3.  Time-domain reflectrometry studies of water binding and structural flexibility in chymotrypsin.

Authors:  S Bone
Journal:  Biochim Biophys Acta       Date:  1987-11-05

4.  A comparative study of spin-labeled serine enzymes: acetylcholinesterase, trypsin, -chymotrypsin, elastase, and subtilisin.

Authors:  J D Morrisett; C A Broomfield
Journal:  J Biol Chem       Date:  1972-11-25       Impact factor: 5.157

5.  Lysozyme film hydration events: an ir and gravimetric study.

Authors:  G Careri; A Giansanti; E Gratton
Journal:  Biopolymers       Date:  1979-05       Impact factor: 2.505

6.  Effects of the presence of water on lysozyme conformation.

Authors:  L J Baker; A M Hansen; P B Rao; W P Bryan
Journal:  Biopolymers       Date:  1983-07       Impact factor: 2.505

7.  Correlation of IR spectroscopic, heat capacity, diamagnetic susceptibility and enzymatic measurements on lysozyme powder.

Authors:  G Careri; E Gratton; P H Yang; J A Rupley
Journal:  Nature       Date:  1980-04-10       Impact factor: 49.962

8.  Dielectric studies of the binding of water to lysozyme.

Authors:  S Bone; R Pethig
Journal:  J Mol Biol       Date:  1982-05-25       Impact factor: 5.469

9.  Hydrogen exchange of lysozyme powders. Hydration dependence of internal motions.

Authors:  J E Schinkel; N W Downer; J A Rupley
Journal:  Biochemistry       Date:  1985-01-15       Impact factor: 3.162

10.  The three-dimensional structure of Bacillus amyloliquefaciens subtilisin at 1.8 A and an analysis of the structural consequences of peroxide inactivation.

Authors:  R Bott; M Ultsch; A Kossiakoff; T Graycar; B Katz; S Power
Journal:  J Biol Chem       Date:  1988-06-05       Impact factor: 5.157

  10 in total
  25 in total

1.  Solvent dielectric effects on protein dynamics.

Authors:  R Affleck; C A Haynes; D S Clark
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-01       Impact factor: 11.205

Review 2.  Characteristics of nearly dry enzymes in organic solvents: implications for biocatalysis in the absence of water.

Authors:  Douglas S Clark
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

3.  Effects of organic solvents and substrate binding on trypsin in acetonitrile and hexane media.

Authors:  Yanyan Meng; Yuan Yuan; Yanyan Zhu; Yanzhi Guo; Menglong Li; Zhimeng Wang; Xuemei Pu; Lin Jiang
Journal:  J Mol Model       Date:  2013-06-23       Impact factor: 1.810

4.  Biocatalyst activity in nonaqueous environments correlates with centisecond-range protein motions.

Authors:  Ross K Eppler; Elton P Hudson; Shannon D Chase; Jonathan S Dordick; Jeffrey A Reimer; Douglas S Clark
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-07       Impact factor: 11.205

5.  Structural determinants of ligand imprinting: a molecular dynamics simulation study of subtilisin in aqueous and apolar solvents.

Authors:  Diana Lousa; António M Baptista; Cláudio M Soares
Journal:  Protein Sci       Date:  2011-02       Impact factor: 6.725

6.  Conformational trapping in a membrane environment: a regulatory mechanism for protein activity?

Authors:  S Arumugam; S Pascal; C L North; W Hu; K C Lee; M Cotten; R R Ketchem; F Xu; M Brenneman; F Kovacs; F Tian; A Wang; S Huo; T A Cross
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-11       Impact factor: 11.205

7.  Mg2+-independent hairpin ribozyme catalysis in hydrated RNA films.

Authors:  A A Seyhan; J M Burke
Journal:  RNA       Date:  2000-02       Impact factor: 4.942

8.  Biocatalytic synthesis of acrylates in supercritical fluids: tuning enzyme activity by changing pressure.

Authors:  S V Kamat; B Iwaskewycz; E J Beckman; A J Russell
Journal:  Proc Natl Acad Sci U S A       Date:  1993-04-01       Impact factor: 11.205

9.  Water dynamics and salt-activation of enzymes in organic media: mechanistic implications revealed by NMR spectroscopy.

Authors:  Ross K Eppler; Russell S Komor; Joyce Huynh; Jonathan S Dordick; Jeffrey A Reimer; Douglas S Clark
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-03       Impact factor: 11.205

10.  Hydrogen/deuterium exchange study of subtilisin Carlsberg during prolonged exposure to organic solvents.

Authors:  Ezio Fasoli; Amaris Ferrer; Gabriel L Barletta
Journal:  Biotechnol Bioeng       Date:  2009-03-01       Impact factor: 4.530

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