Literature DB >> 16585507

Water dynamics and salt-activation of enzymes in organic media: mechanistic implications revealed by NMR spectroscopy.

Ross K Eppler1, Russell S Komor, Joyce Huynh, Jonathan S Dordick, Jeffrey A Reimer, Douglas S Clark.   

Abstract

Deuterium spin relaxation was used to examine the motion of enzyme-bound water on subtilisin Carlsberg co-lyophilized with inorganic salts for activation in different organic solvents. Spectral editing was used to ensure that the relaxation times were associated with relatively mobile deuterons, which were contributed almost entirely by D(2)O rather than hydrogen-deuteron exchange on the protein. The results indicate that the timescale of motion for residual water molecules on the biocatalyst, (tau(c))(D(2)O), in hexane decreased from 65 ns (salt-free) to 0.58 ns (98% CsF) as (k(cat)/K(M))(app) of the biocatalyst preparation increased from 0.092 s(-1) x M(-1) (salt-free) to 1,140 s(-1) x M(-1) (98% CsF). A similar effect was apparent in acetone; the timescale decreased from 24 ns (salt-free) to 2.87 ns (98% KF), with a corresponding increase in (k(cat)/K(M))(app) of 0.140 s(-1) x M(-1) (salt-free) to 12.8 s(-1) x M(-1) (98% KF). Although a global correlation between water mobility and enzyme activity was not evident, linear correlations between ln[(k(cat)/K(M))(app)] and (tau(c))(D(2)O) were obtained for salt-activated enzyme preparations in both hexane and acetone. Furthermore, a direct correlation was evident between (k(cat)/K(M))(app) and the total amount of mobile water per mass of enzyme. These results suggest that increases in enzyme-bound water mobility mediated by the presence of salt act as a molecular lubricant and enhance enzyme flexibility in a manner functionally similar to temperature. Greater flexibility may permit a larger degree of local transition-state mobility, reflected by a more positive entropy of activation, for the salt-activated enzyme compared with the salt-free enzyme. This increased mobility may contribute to the dramatic increases in biocatalyst activity.

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Year:  2006        PMID: 16585507      PMCID: PMC1458637          DOI: 10.1073/pnas.0601113103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  Nativelike enzyme properties are important for optimum activity in neat organic solvents.

Authors:  K Griebenow; M Vidal; C Baéz; A M Santos; G Barletta
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Review 2.  Characteristics of nearly dry enzymes in organic solvents: implications for biocatalysis in the absence of water.

Authors:  Douglas S Clark
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

3.  Dielectric studies of protein hydration and hydration-induced flexibility.

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4.  Enzymatic catalysis in nonaqueous solvents.

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Journal:  J Biol Chem       Date:  1988-03-05       Impact factor: 5.157

5.  Enzyme-catalyzed processes in organic solvents.

Authors:  A Zaks; A M Klibanov
Journal:  Proc Natl Acad Sci U S A       Date:  1985-05       Impact factor: 11.205

6.  The effect of water on enzyme action in organic media.

Authors:  A Zaks; A M Klibanov
Journal:  J Biol Chem       Date:  1988-06-15       Impact factor: 5.157

7.  Testing for diffusion limitations in salt-activated enzyme catalysts operating in organic solvents.

Authors:  B A Bedell; V V Mozhaev; D S Clark; J S Dordick
Journal:  Biotechnol Bioeng       Date:  1998-06-20       Impact factor: 4.530

8.  Tuning lipase enantioselectivity in organic media using solid-state buffers.

Authors:  M Quirós; M C Parker; N J Turner
Journal:  J Org Chem       Date:  2001-07-27       Impact factor: 4.354

9.  Combinatorial formulation of biocatalyst preparations for increased activity in organic solvents: salt activation of penicillin amidase.

Authors:  John P Lindsay; Douglas S Clark; Jonathan S Dordick
Journal:  Biotechnol Bioeng       Date:  2004-03-05       Impact factor: 4.530

10.  Hydration of enzyme in nonaqueous media is consistent with solvent dependence of its activity.

Authors:  Lu Yang; Jonathan S Dordick; Shekhar Garde
Journal:  Biophys J       Date:  2004-08       Impact factor: 4.033

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  14 in total

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2.  Mechanism for intein C-terminal cleavage: a proposal from quantum mechanical calculations.

Authors:  Philip Shemella; Brian Pereira; Yiming Zhang; Patrick Van Roey; Georges Belfort; Shekhar Garde; Saroj K Nayak
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Review 3.  IMP dehydrogenase: structure, mechanism, and inhibition.

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Journal:  Chem Rev       Date:  2009-07       Impact factor: 60.622

4.  Effects of organic solvents and substrate binding on trypsin in acetonitrile and hexane media.

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Journal:  J Mol Model       Date:  2013-06-23       Impact factor: 1.810

5.  Biocatalyst activity in nonaqueous environments correlates with centisecond-range protein motions.

Authors:  Ross K Eppler; Elton P Hudson; Shannon D Chase; Jonathan S Dordick; Jeffrey A Reimer; Douglas S Clark
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-07       Impact factor: 11.205

6.  "Fluctuograms" reveal the intermittent intra-protein communication in subtilisin Carlsberg and correlate mechanical coupling with co-evolution.

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7.  Allosteric activation via kinetic control: potassium accelerates a conformational change in IMP dehydrogenase.

Authors:  Thomas V Riera; Lianqing Zheng; Helen R Josephine; Donghong Min; Wei Yang; Lizbeth Hedstrom
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8.  Calcium-ion-induced stabilization of the protease from Bacillus cereus WQ9-2 in aqueous hydrophilic solvents: effect of calcium ion binding on the hydration shell and intramolecular interactions.

Authors:  Jiaxing Xu; Yu Zhuang; Bin Wu; Long Su; Bingfang He
Journal:  J Biol Inorg Chem       Date:  2013-01-16       Impact factor: 3.358

Review 9.  The dynamic determinants of reaction specificity in the IMPDH/GMPR family of (β/α)(8) barrel enzymes.

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Journal:  Crit Rev Biochem Mol Biol       Date:  2012-02-15       Impact factor: 8.250

10.  Water Networks and Correlated Motions in Mutant Isocitrate Dehydrogenase 1 (IDH1) Are Critical for Allosteric Inhibitor Binding and Activity.

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Journal:  Biochemistry       Date:  2020-01-13       Impact factor: 3.162

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