Literature DB >> 12805583

A resource of mapped dissociation launch pads for targeted insertional mutagenesis in the Arabidopsis genome.

Paul R Muskett1, Leah Clissold, Adriano Marocco, Patricia S Springer, Robert Martienssen, Caroline Dean.   

Abstract

We describe a new resource for targeted insertional mutagenesis in Arabidopsis using a maize (Zea mays) Activator/Dissociation (Ds) two-element system. The two components of the system, T-DNA vectors carrying a Ds launch pad and a stable Activator transposase source, were designed to simplify selection of transposition events and maximize their usefulness. Because Ds elements preferentially transpose to nearby genomic sites, they can be used in targeted mutagenesis of linked genes. To efficiently target all genes throughout the genome, we generated a large population of transgenic Arabidopsis plants containing the Ds launch pad construct, identified lines containing single Ds launch pad inserts, and mapped the positions of Ds launch pads in 89 lines. The integration sites of the Ds launch pads were relatively evenly distributed on all five chromosomes, except for a region of chromosomes 2 and 4 and the centromeric regions. This resource therefore provides access to the majority of the Arabidopsis genome for targeted tagging.

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Year:  2003        PMID: 12805583      PMCID: PMC166993          DOI: 10.1104/pp.102.016535

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  48 in total

1.  Function search in a large transcription factor gene family in Arabidopsis: assessing the potential of reverse genetics to identify insertional mutations in R2R3 MYB genes.

Authors:  R C Meissner; H Jin; E Cominelli; M Denekamp; A Fuertes; R Greco; H D Kranz; S Penfield; K Petroni; A Urzainqui; C Martin; J Paz-Ares; S Smeekens; C Tonelli; B Weisshaar; E Baumann; V Klimyuk; S Marillonnet; K Patel; E Speulman; A F Tissier; D Bouchez; J J Jones; A Pereira; E Wisman
Journal:  Plant Cell       Date:  1999-10       Impact factor: 11.277

2.  Analysis of flanking sequences from dissociation insertion lines: a database for reverse genetics in Arabidopsis.

Authors:  S Parinov; M Sevugan; D Ye; W C Yang; M Kumaran; V Sundaresan
Journal:  Plant Cell       Date:  1999-12       Impact factor: 11.277

3.  Use of Ac as an insertional mutagen in Arabidopsis.

Authors:  A M Bhatt; T Page; E J Lawson; C Lister; C Dean
Journal:  Plant J       Date:  1996-06       Impact factor: 6.417

4.  Targeted disruption in Arabidopsis.

Authors:  S A Kempin; S J Liljegren; L M Block; S D Rounsley; M F Yanofsky; E Lam
Journal:  Nature       Date:  1997-10-23       Impact factor: 49.962

5.  Characterization and mapping of Ds-GUS-T-DNA lines for targeted insertional mutagenesis.

Authors:  D Smith; Y Yanai; Y G Liu; S Ishiguro; K Okada; D Shibata; R F Whittier; N V Fedoroff
Journal:  Plant J       Date:  1996-10       Impact factor: 6.417

6.  A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences.

Authors:  T Triglia; M G Peterson; D J Kemp
Journal:  Nucleic Acids Res       Date:  1988-08-25       Impact factor: 16.971

7.  Activation tagging in Arabidopsis.

Authors:  D Weigel; J H Ahn; M A Blázquez; J O Borevitz; S K Christensen; C Fankhauser; C Ferrándiz; I Kardailsky; E J Malancharuvil; M M Neff; J T Nguyen; S Sato; Z Y Wang; Y Xia; R A Dixon; M J Harrison; C J Lamb; M F Yanofsky; J Chory
Journal:  Plant Physiol       Date:  2000-04       Impact factor: 8.340

8.  Characterization of the transposition pattern of the Ac element in Arabidopsis thaliana using endonuclease I-SceI.

Authors:  C Machida; H Onouchi; J Koizumi; S Hamada; E Semiarti; S Torikai; Y Machida
Journal:  Proc Natl Acad Sci U S A       Date:  1997-08-05       Impact factor: 11.205

9.  Regional insertional mutagenesis on chromosome III of Arabidopsis thaliana using the maize Ac element.

Authors:  P Dubois; S Cutler; F J Belzile
Journal:  Plant J       Date:  1998-01       Impact factor: 6.417

10.  The molecular basis of sulfonylurea herbicide resistance in tobacco.

Authors:  K Y Lee; J Townsend; J Tepperman; M Black; C F Chui; B Mazur; P Dunsmuir; J Bedbrook
Journal:  EMBO J       Date:  1988-05       Impact factor: 11.598

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  7 in total

1.  Distribution of Activator (Ac) throughout the maize genome for use in regional mutagenesis.

Authors:  Judith M Kolkman; Liza J Conrad; Phyllis R Farmer; Kristine Hardeman; Kevin R Ahern; Paul E Lewis; Ruairidh J H Sawers; Sara Lebejko; Paul Chomet; Thomas P Brutnell
Journal:  Genetics       Date:  2004-11-01       Impact factor: 4.562

2.  Dissociation (Ds) constructs, mapped Ds launch pads and a transiently-expressed transposase system suitable for localized insertional mutagenesis in rice.

Authors:  Narayana M Upadhyaya; Qian-Hao Zhu; Xue-Rong Zhou; Andrew L Eamens; Mohammad S Hoque; Kerrie Ramm; Ramannee Shivakkumar; Kathryn F Smith; Shu-Ting Pan; Suzhi Li; Kefan Peng; Song J Kim; Elizabeth S Dennis
Journal:  Theor Appl Genet       Date:  2006-02-28       Impact factor: 5.699

3.  Targeted Ds-tagging strategy generates high allelic diversity at the Arabidopsis HY2 locus.

Authors:  Audrey Creff; Bénédicte Léonard; Thierry Desnos
Journal:  Plant Mol Biol       Date:  2006-07       Impact factor: 4.076

4.  Ac-immobilized, a stable source of Activator transposase that mediates sporophytic and gametophytic excision of Dissociation elements in maize.

Authors:  Liza J Conrad; Thomas P Brutnell
Journal:  Genetics       Date:  2005-09-02       Impact factor: 4.562

5.  The rice miniature inverted repeat transposable element mPing is an effective insertional mutagen in soybean.

Authors:  C Nathan Hancock; Feng Zhang; Kristen Floyd; Aaron O Richardson; Peter Lafayette; Donna Tucker; Susan R Wessler; Wayne A Parrott
Journal:  Plant Physiol       Date:  2011-08-15       Impact factor: 8.340

6.  An inducible targeted tagging system for localized saturation mutagenesis in Arabidopsis.

Authors:  Bindu Nishal; Titima Tantikanjana; Venkatesan Sundaresan
Journal:  Plant Physiol       Date:  2005-01       Impact factor: 8.340

7.  A candidate gene OsAPC6 of anaphase-promoting complex of rice identified through T-DNA insertion.

Authors:  Mankesh Kumar; P Osman Basha; Anju Puri; Deepak Rajpurohit; Gursharn Singh Randhawa; Tilak Raj Sharma; Harcharan Singh Dhaliwal
Journal:  Funct Integr Genomics       Date:  2010-01-21       Impact factor: 3.410

  7 in total

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