Literature DB >> 16505997

Dissociation (Ds) constructs, mapped Ds launch pads and a transiently-expressed transposase system suitable for localized insertional mutagenesis in rice.

Narayana M Upadhyaya1, Qian-Hao Zhu, Xue-Rong Zhou, Andrew L Eamens, Mohammad S Hoque, Kerrie Ramm, Ramannee Shivakkumar, Kathryn F Smith, Shu-Ting Pan, Suzhi Li, Kefan Peng, Song J Kim, Elizabeth S Dennis.   

Abstract

We have developed a transiently-expressed transposase (TET)-mediated Dissociation (Ds) insertional mutagenesis system for generating stable insertion lines in rice which will allow localized mutagenesis of a chromosomal region. In this system, a Ds containing T-DNA construct was used to produce Ds launch pad lines. Callus tissues, from single-copy Ds/T-DNA lines, were then transiently infected with Agrobacterium harbouring an immobile Ac (iAc) construct, also containing a green fluorescent protein gene (sgfpS65T) as the visual marker. We have regenerated stable Ds insertion lines at a frequency of 9-13% using selection for Ds excision and GFP counter selection against iAc and nearly half of them were unique insertion lines. Double transformants (iAc/Ds) were also obtained and their progeny yielded approximately 10% stable insertion lines following excision and visual marker screening with 50% redundancy. In general, more than 50% of the Ds reinsertions were within 1 cM of the launch pad. We have produced a large number of single-copy Ds/T-DNA launch pads distributed over the rice chromosomes and have further refined the Ds/T-DNA construct to enrich for "clean" single-copy T-DNA insertions. The availability of single copy "clean" Ds/T-DNA launch pads will facilitate chromosomal region-directed insertion mutagenesis. This system provides an opportunity for distribution of gene tagging tasks among collaborating laboratories on the basis of chromosomal locations.

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Year:  2006        PMID: 16505997     DOI: 10.1007/s00122-006-0235-0

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  43 in total

1.  Molecular analysis of rice plants harboring an Ac/Ds transposable element-mediated gene trapping system.

Authors:  H G Chin; M S Choe; S H Lee; S H Park; J C Koo; N Y Kim; J J Lee; B G Oh; G H Yi; S C Kim; H C Choi; M J Cho; C D Han
Journal:  Plant J       Date:  1999-09       Impact factor: 6.417

2.  Frequency and pattern of transposition of the maize transposable element Ds in transgenic rice plants.

Authors:  Y Nakagawa; C Machida; Y Machida; K Toriyama
Journal:  Plant Cell Physiol       Date:  2000-06       Impact factor: 4.927

3.  Efficient gene targeting by homologous recombination in rice.

Authors:  Rie Terada; Hiroko Urawa; Yoshishige Inagaki; Kazuo Tsugane; Shigeru Iida
Journal:  Nat Biotechnol       Date:  2002-09-09       Impact factor: 54.908

4.  High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics.

Authors:  Christophe Sallaud; Céline Gay; Pierre Larmande; Martine Bès; Pietro Piffanelli; Benoit Piégu; Gaétan Droc; Farid Regad; Emmanuelle Bourgeois; Donaldo Meynard; Christophe Périn; Xavier Sabau; Alain Ghesquière; Jean Christophe Glaszmann; Michel Delseny; Emmanuel Guiderdoni
Journal:  Plant J       Date:  2004-08       Impact factor: 6.417

5.  Excision of a Ds-like maize transposable element (Ac delta) in a transient assay in Petunia is enhanced by a truncated coding region of the transposable element Ac.

Authors:  N Houba-Hérin; D Becker; A Post; Y Larondelle; P Starlinger
Journal:  Mol Gen Genet       Date:  1990-10

6.  Ds read-out transcription in transgenic tomato plants.

Authors:  G N Rudenko; H J Nijkamp; J Hille
Journal:  Mol Gen Genet       Date:  1994-05-25

7.  An efficient method for dispersing Ds elements in the barley genome as a tool for determining gene function.

Authors:  T Koprek; D McElroy; J Louwerse; R Williams-Carrier; P G Lemaux
Journal:  Plant J       Date:  2000-10       Impact factor: 6.417

8.  A bidirectional gene trap construct suitable for T-DNA and Ds-mediated insertional mutagenesis in rice (Oryza sativa L.).

Authors:  Andrew L Eamens; Chris L Blanchard; Elizabeth S Dennis; Narayana M Upadhyaya
Journal:  Plant Biotechnol J       Date:  2004-09       Impact factor: 9.803

9.  Studies on transformation of Escherichia coli with plasmids.

Authors:  D Hanahan
Journal:  J Mol Biol       Date:  1983-06-05       Impact factor: 5.469

10.  Establishing an efficient Ac/Ds tagging system in rice: large-scale analysis of Ds flanking sequences.

Authors:  Tatiana Kolesnik; Ildiko Szeverenyi; Doris Bachmann; Chellian Santhosh Kumar; Shuye Jiang; Rengasamy Ramamoorthy; Minnie Cai; Zhi Gang Ma; Venkatesan Sundaresan; Srinivasan Ramachandran
Journal:  Plant J       Date:  2004-01       Impact factor: 6.417

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  16 in total

1.  Compact shoot and leafy head 1, a mutation affects leaf initiation and developmental transition in rice (Oryza sativa L).

Authors:  Qian-Hao Zhu; Elizabeth S Dennis; Narayana M Upadhyaya
Journal:  Plant Cell Rep       Date:  2006-11-17       Impact factor: 4.570

2.  Analysis of gene-trap Ds rice populations in Korea.

Authors:  Sung Han Park; Nam Soo Jun; Chul Min Kim; Tae Yong Oh; Jin Huang; Yuan-Hu Xuan; Soon Ju Park; Byoung Il Je; Hai Long Piao; Soo Hyun Park; Young Soon Cha; Byung Ohg Ahn; Hyeon So Ji; Myung Chul Lee; Seok Cheol Suh; Min-Hee Nam; Moo Young Eun; Gihwan Yi; Doh Won Yun; Chang-Deok Han
Journal:  Plant Mol Biol       Date:  2007-07-05       Impact factor: 4.076

3.  Mutant resources in rice for functional genomics of the grasses.

Authors:  Arjun Krishnan; Emmanuel Guiderdoni; Gynheung An; Yue-ie C Hsing; Chang-deok Han; Myung Chul Lee; Su-May Yu; Narayana Upadhyaya; Srinivasan Ramachandran; Qifa Zhang; Venkatesan Sundaresan; Hirohiko Hirochika; Hei Leung; Andy Pereira
Journal:  Plant Physiol       Date:  2009-01       Impact factor: 8.340

4.  SNP discovery and genetic mapping of T-DNA insertional mutants in Fragaria vesca L.

Authors:  J J Ruiz-Rojas; D J Sargent; V Shulaev; A W Dickerman; J Pattison; S H Holt; A Ciordia; Richard E Veilleux
Journal:  Theor Appl Genet       Date:  2010-03-27       Impact factor: 5.699

5.  Loss of Cellulose synthase-like F6 function affects mixed-linkage glucan deposition, cell wall mechanical properties, and defense responses in vegetative tissues of rice.

Authors:  Miguel E Vega-Sánchez; Yves Verhertbruggen; Ulla Christensen; Xuewei Chen; Vaishali Sharma; Patanjali Varanasi; Stephen A Jobling; Mark Talbot; Rosemary G White; Michael Joo; Seema Singh; Manfred Auer; Henrik V Scheller; Pamela C Ronald
Journal:  Plant Physiol       Date:  2012-03-02       Impact factor: 8.340

6.  Mutagenesis of barley malting quality QTLs with Ds transposons.

Authors:  Surinder Singh; Han Qi Tan; Jaswinder Singh
Journal:  Funct Integr Genomics       Date:  2011-11-22       Impact factor: 3.410

7.  Remusatia vivipara lectin and Sclerotium rolfsii lectin interfere with the development and gall formation activity of Meloidogyne incognita in transgenic tomato.

Authors:  Yogesh S Bhagat; Ramesh S Bhat; Rohini M Kolekar; Ashlesha C Patil; S Lingaraju; R V Patil; S S Udikeri
Journal:  Transgenic Res       Date:  2019-03-13       Impact factor: 2.788

8.  Transposon based activation tagging in diploid strawberry and monoploid derivatives of potato.

Authors:  Nan Lu; Jared D Carter; Tatiana Boluarte Medina; Sarah H Holt; Norma Constanza Manrique-Carpintero; Kendall T Upham; Andy Pereira; Vladimir Shulaev; Richard E Veilleux
Journal:  Plant Cell Rep       Date:  2014-04-12       Impact factor: 4.570

9.  A rice phenomics study--phenotype scoring and seed propagation of a T-DNA insertion-induced rice mutant population.

Authors:  Chyr-Guan Chern; Ming-Jen Fan; Su-May Yu; Ai-Ling Hour; Po-Chang Lu; Yao-Cheng Lin; Fu-Jin Wei; Sheng-Chung Huang; Shu Chen; Ming-Hsing Lai; Ching-Shan Tseng; Hsing-Mu Yen; Woei-Shyuan Jwo; Chen-Chia Wu; Tung-Lung Yang; Lung-Sheng Li; Yih-Cheng Kuo; Su-Mien Li; Charng-Pei Li; Chiu-Kai Wey; Arunee Trisiriroj; Hsing-Fang Lee; Yue-Ie C Hsing
Journal:  Plant Mol Biol       Date:  2007-08-14       Impact factor: 4.076

10.  Over-expression of miR172 causes loss of spikelet determinacy and floral organ abnormalities in rice (Oryza sativa).

Authors:  Qian-Hao Zhu; Narayana M Upadhyaya; Frank Gubler; Chris A Helliwell
Journal:  BMC Plant Biol       Date:  2009-12-17       Impact factor: 4.215

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