Literature DB >> 20659918

The distribution of fitness effects of new beneficial mutations in Pseudomonas fluorescens.

Michael J McDonald1, Tim F Cooper, Hubertus J E Beaumont, Paul B Rainey.   

Abstract

Theoretical studies of adaptation emphasize the importance of understanding the distribution of fitness effects (DFE) of new mutations. We report the isolation of 100 adaptive mutants-without the biasing influence of natural selection-from an ancestral genotype whose fitness in the niche occupied by the derived type is extremely low. The fitness of each derived genotype was determined relative to a single reference type and the fitness effects found to conform to a normal distribution. When fitness was measured in a different environment, the rank order changed, but not the shape of the distribution. We argue that, even with detailed knowledge of the genetic architecture underpinning the adaptive types (as is the case here), the DFEs remain unpredictable, and we discuss the possibility that general explanations for the shape of the DFE might not be possible in the absence of organism-specific biological details.

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Year:  2010        PMID: 20659918      PMCID: PMC3030884          DOI: 10.1098/rsbl.2010.0547

Source DB:  PubMed          Journal:  Biol Lett        ISSN: 1744-9561            Impact factor:   3.703


  20 in total

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Authors:  M Imhof; C Schlotterer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Immigration history controls diversification in experimental adaptive radiation.

Authors:  Tadashi Fukami; Hubertus J E Beaumont; Xue-Xian Zhang; Paul B Rainey
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3.  Adaptive divergence in experimental populations of Pseudomonas fluorescens. II. Role of the GGDEF regulator WspR in evolution and development of the wrinkly spreader phenotype.

Authors:  Patrick Goymer; Sophie G Kahn; Jacob G Malone; Stefanie M Gehrig; Andrew J Spiers; Paul B Rainey
Journal:  Genetics       Date:  2006-04-19       Impact factor: 4.562

4.  The distribution of beneficial and fixed mutation fitness effects close to an optimum.

Authors:  Guillaume Martin; Thomas Lenormand
Journal:  Genetics       Date:  2008-05-27       Impact factor: 4.562

5.  Testing the extreme value domain of attraction for distributions of beneficial fitness effects.

Authors:  Craig J Beisel; Darin R Rokyta; Holly A Wichman; Paul Joyce
Journal:  Genetics       Date:  2007-06-11       Impact factor: 4.562

6.  Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversity.

Authors:  Eleni Bantinaki; Rees Kassen; Christopher G Knight; Zena Robinson; Andrew J Spiers; Paul B Rainey
Journal:  Genetics       Date:  2007-03-04       Impact factor: 4.562

7.  Mutational activation of niche-specific genes provides insight into regulatory networks and bacterial function in a complex environment.

Authors:  Stephen R Giddens; Robert W Jackson; Christina D Moon; Michael A Jacobs; Xue-Xian Zhang; Stefanie M Gehrig; Paul B Rainey
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-07       Impact factor: 11.205

8.  Adaptive divergence in experimental populations of Pseudomonas fluorescens. IV. Genetic constraints guide evolutionary trajectories in a parallel adaptive radiation.

Authors:  Michael J McDonald; Stefanie M Gehrig; Peter L Meintjes; Xue-Xian Zhang; Paul B Rainey
Journal:  Genetics       Date:  2009-08-24       Impact factor: 4.562

9.  The distribution of fitness effects of beneficial mutations in Pseudomonas aeruginosa.

Authors:  R Craig MacLean; Angus Buckling
Journal:  PLoS Genet       Date:  2009-03-06       Impact factor: 5.917

10.  Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens.

Authors:  Mark W Silby; Ana M Cerdeño-Tárraga; Georgios S Vernikos; Stephen R Giddens; Robert W Jackson; Gail M Preston; Xue-Xian Zhang; Christina D Moon; Stefanie M Gehrig; Scott A C Godfrey; Christopher G Knight; Jacob G Malone; Zena Robinson; Andrew J Spiers; Simon Harris; Gregory L Challis; Alice M Yaxley; David Harris; Kathy Seeger; Lee Murphy; Simon Rutter; Rob Squares; Michael A Quail; Elizabeth Saunders; Konstantinos Mavromatis; Thomas S Brettin; Stephen D Bentley; Joanne Hothersall; Elton Stephens; Christopher M Thomas; Julian Parkhill; Stuart B Levy; Paul B Rainey; Nicholas R Thomson
Journal:  Genome Biol       Date:  2009-05-11       Impact factor: 13.583

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  22 in total

1.  Founder niche constrains evolutionary adaptive radiation.

Authors:  Régis C E Flohr; Carsten J Blom; Paul B Rainey; Hubertus J E Beaumont
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-04       Impact factor: 11.205

2.  Multiple adaptive substitutions during evolution in novel environments.

Authors:  Kavita Jain; Sarada Seetharaman
Journal:  Genetics       Date:  2011-09-06       Impact factor: 4.562

3.  Cost of adaptation and fitness effects of beneficial mutations in Pseudomonas fluorescens.

Authors:  Thomas Bataillon; Tianyi Zhang; Rees Kassen
Journal:  Genetics       Date:  2011-08-25       Impact factor: 4.562

4.  The evolutionarily stable distribution of fitness effects.

Authors:  Daniel P Rice; Benjamin H Good; Michael M Desai
Journal:  Genetics       Date:  2015-03-10       Impact factor: 4.562

5.  Dynamics and Fate of Beneficial Mutations Under Lineage Contamination by Linked Deleterious Mutations.

Authors:  Sophie Pénisson; Tanya Singh; Paul Sniegowski; Philip Gerrish
Journal:  Genetics       Date:  2017-01-18       Impact factor: 4.562

6.  Estimating the number of one-step beneficial mutations.

Authors:  Andrzej J Wojtowicz; Craig R Miller; Paul Joyce
Journal:  Stat Appl Genet Mol Biol       Date:  2012-07-19

7.  The basis of antagonistic pleiotropy in hfq mutations that have opposite effects on fitness at slow and fast growth rates.

Authors:  R Maharjan; C McKenzie; A Yeung; T Ferenci
Journal:  Heredity (Edinb)       Date:  2012-11-21       Impact factor: 3.821

8.  The fates of mutant lineages and the distribution of fitness effects of beneficial mutations in laboratory budding yeast populations.

Authors:  Evgeni M Frenkel; Benjamin H Good; Michael M Desai
Journal:  Genetics       Date:  2014-02-10       Impact factor: 4.562

9.  Monotonicity of fitness landscapes and mutation rate control.

Authors:  Roman V Belavkin; Alastair Channon; Elizabeth Aston; John Aston; Rok Krašovec; Christopher G Knight
Journal:  J Math Biol       Date:  2016-04-12       Impact factor: 2.259

10.  An ABC method for estimating the rate and distribution of effects of beneficial mutations.

Authors:  Jorge A Moura de Sousa; Paulo R A Campos; Isabel Gordo
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

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