Literature DB >> 21647741

Improved accuracy in measuring one-bond and two-bond (15)N, (13)C (α) coupling constants in proteins by double-inphase/antiphase (DIPAP) spectroscopy.

Frank Löhr1, Sina Reckel, Susanne Stefer, Volker Dötsch, Jürgen M Schmidt.   

Abstract

An extension to HN(CO-α/β-N,C(α)-J)-TROSY (Permi and Annila in J Biomol NMR 16:221-227, 2000) is proposed that permits the simultaneous determination of the four coupling constants (1) J (N'(i)Cα(i)), (2) J (HN(i)Cα(i)), (2) J (Cα(i-1)N'(i)), and (3) J (Cα(i-1)HN(i)) in (15)N,(13)C-labeled proteins. Contrasting the original scheme, in which two separate subspectra exhibit the (2) J (CαN') coupling as inphase and antiphase splitting (IPAP), we here record four subspectra that exhibit all combinations of inphase and antiphase splittings possible with respect to both (2) J (CαN') and (1) J (N'Cα) (DIPAP). Complementary sign patterns in the different spectrum constituents overdetermine the coupling constants which can thus be extracted at higher accuracy than is possible with the original experiment. Fully exploiting data redundance, simultaneous 2D lineshape fitting of the E.COSY multiplet tilts in all four subspectra provides all coupling constants at ultimate precision. Cross-correlation and differential-relaxation effects were taken into account in the evaluation procedure. By applying a four-point Fourier transform, the set of spectra is reversibly interconverted between DIPAP and spin-state representations. Methods are exemplified using proteins of various size.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21647741     DOI: 10.1007/s10858-011-9507-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  51 in total

1.  Simultaneous measurement of protein one-bond and two-bond nitrogen-carbon coupling constants using an internally referenced quantitative J-correlated [(15)N,(1)H]-TROSY-HNC experiment.

Authors:  Hans L J Wienk; Mitcheell M Martínez; Gary N Yalloway; Jürgen M Schmidt; Carlos Pérez; Heinz Rüterjans; Frank Löhr
Journal:  J Biomol NMR       Date:  2003-02       Impact factor: 2.835

2.  A novel approach for the sequential backbone assignment of larger proteins: selective intra-HNCA and DQ-HNCA.

Authors:  Daniel Nietlispach; Yutaka Ito; Ernest D Laue
Journal:  J Am Chem Soc       Date:  2002-09-18       Impact factor: 15.419

3.  Use of selective C alpha pulses for improvement of HN(CA)CO-D and HN(COCA)NH-D experiments.

Authors:  H Matsuo; E Kupce; H Li; G Wagner
Journal:  J Magn Reson B       Date:  1996-05

4.  Backbone dynamics of ribonuclease T1 and its complex with 2'GMP studied by two-dimensional heteronuclear NMR spectroscopy.

Authors:  D Fushman; R Weisemann; H Thüring; H Rüterjans
Journal:  J Biomol NMR       Date:  1994-01       Impact factor: 2.835

5.  Effective rotational correlation times of proteins from NMR relaxation interference.

Authors:  Donghan Lee; Christian Hilty; Gerhard Wider; Kurt Wüthrich
Journal:  J Magn Reson       Date:  2005-09-26       Impact factor: 2.229

6.  Single Transition-to-single Transition Polarization Transfer (ST2-PT) in [15N,1H]-TROSY.

Authors:  K V Pervushin; G Wider; K Wüthrich
Journal:  J Biomol NMR       Date:  1998-08       Impact factor: 2.835

7.  Ionization properties of titratable groups in ribonuclease T1. I. pKa values in the native state determined by two-dimensional heteronuclear NMR spectroscopy.

Authors:  N Spitzner; F Löhr; S Pfeiffer; A Koumanov; A Karshikoff; H Rüterjans
Journal:  Eur Biophys J       Date:  2001-07       Impact factor: 1.733

8.  Measurement of 15N-13C J couplings in staphylococcal nuclease.

Authors:  F Delaglio; D A Torchia; A Bax
Journal:  J Biomol NMR       Date:  1991-11       Impact factor: 2.835

9.  Preparative scale expression of membrane proteins in Escherichia coli-based continuous exchange cell-free systems.

Authors:  Daniel Schwarz; Friederike Junge; Florian Durst; Nadine Frölich; Birgit Schneider; Sina Reckel; Solmaz Sobhanifar; Volker Dötsch; Frank Bernhard
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

10.  Low-conductivity buffers for high-sensitivity NMR measurements.

Authors:  Alexander E Kelly; Horng D Ou; Richard Withers; Volker Dötsch
Journal:  J Am Chem Soc       Date:  2002-10-09       Impact factor: 15.419

View more
  1 in total

1.  A J-modulated protonless NMR experiment characterizes the conformational ensemble of the intrinsically disordered protein WIP.

Authors:  Eva Rozentur-Shkop; Gil Goobes; Jordan H Chill
Journal:  J Biomol NMR       Date:  2016-11-14       Impact factor: 2.835

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.